BAC Information

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BAC

Clone NameMSMg01-452H13
Chromosome10 (Build37)
Map Location 32,188,448 - 32,189,081
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452H13.T7 (MSMg01no452_h13.b1)MSMg01-452H13.TJ (MSMg01no452_h13.g1)
ACCAG539715AG539716
length767767
length of high quality
(start - end)
634 (71 - 704)629 (78 - 706)
definitionCHROMAT_FILE: MSMg01no452_h13.b1 PHD_FILE: MSMg01no452_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:02 2005CHROMAT_FILE: MSMg01no452_h13.g1 PHD_FILE: MSMg01no452_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCGAGAGGGACCGCG
GAANNCNNCTGTTACGAGGGTAGGCCATGCTTCTTTTTCTCTGTGCTCTG
CCTTGAGATGGGACAGTCTGTTCTGGTTTAAGCTCTAGCCATGCATCCCA
TGTATAAAGGGTCTGAAAAACCCTATGGTCTGGGGCAAAAGGAATGAAGA
CAGACACATGGACACAAGTAGAGAAAATCAGGTATCATGTAGGTTGTAAA
TCCTCTGATGGAATGATTCTGATTATTCAGCAACCTGACCTCTACATGTT
TGTTATGTACAGCACATAGGTAGGGATTAGTTAGGCTCTGTAGGTGAGTA
GTCTCAGGCCATAAGCAATCTGGAAAAGACGCTGCAGTTGAGTTATTACA
CACACTGATCAGTCACTGGTAAACAACTACTTGAAGCAGAAGAAGGCATT
TCCATTCTAAGCCTGAATGGAAGAAGCCATTTTTTCATTACACCTTGTCC
CTTGACTTGGCCATCCCAATGTTAATTACCACTTTATACATACACTCAAA
GCACCCTTGTCTCCCCTGACCATGATATCCTTTCCTCATTGTAAACTCAA
ATAAATAAAACCTCCTAAGCCTTGCATTTTAGCTTCTAGAACTACAAGCC
CAAATAAATCTTTCTTTAAATCATATATAGTCTGTGTCAGGTATTGTGGC
AGAGACAGAAACCTGAATAACAAATCATTTTAGTTAGTGCTTATCATCTG
GTTTTCATGTGCTATGA
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGCACCCCATT
TTGAATAGGGTTATTTGATTCTCTTGAGTCTAACTTCTTGAGTTCTTTGT
ACATATTGTATATTAGCACTCTATCGGATGTAGGATTGGTAAAGATCTTT
TCTCAATCTGTTGGTTGCCATTTTGTCCCATTGACAGTGTCCTTTGCCTT
ACAAAGCTTTGTAATTTTATGAGGTCCCATTTGTCTATTTTTCATCACAG
AGCATAAGCCATTGGTGTTCTGTTCAGGAAAATTTTTCCTGTGACCATGT
GTTCGAGGCTCTTTCCTACTTTCTTTTTCTATTAGTTTCAGTGTATCTTG
TTTTATGTGAAGGTCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGAG
ATAAGAATGGATCGATGATTTGCATTCTTCGATATTCTGACAACCAGTTG
AAACAGCACCATTTGTTGAAAATGATGTCTTTTTTCCACTAGATAGTTTT
AGCTCCTTTACCAAAGATCAAGTGACCATAGGTGTGTGGGTTCACTTCTG
GGTCTTCAATTCTATTCCGTTGATTTTCCTGCCTGTCTCTGTACCAATAC
CATATACTTGGTTTTTATTTGATTGTTTGTTGTTTATTTATCACTATTGC
TCTGTAATACAGCTTTAGATCAGGGAGGGTGATTCCCTTAGACGTTCTTT
TACTGTTGAGAATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_h13.b1 MSMg01no452_h13.b1 CHROMAT_FILE:
MSMg01no452_h13.b1 PHD_FILE: MSMg01no452_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:02 2005
         (634 letters)



>mm_chr10_32188248_32189281
          Length = 1034

 Score = 1187 bits (614), Expect = 0.0
 Identities = 629/634 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggccatgcttctttttctctgtgctctgccttgagatgggacagtctgttctggttta 60
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 834 taggctatgcttctttttctctgttctctgccttgagatgggacagtctgttctggttta 775

                                                                       
Query: 61  agctctagccatgcatcccatgtataaagggtctgaaaaaccctatggtctggggcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 agctctagccatgcatcccatgtataaagggtctgaaaaaccctatggtctggggcaaaa 715

                                                                       
Query: 121 ggaatgaagacagacacatggacacaagtagagaaaatcaggtatcatgtaggttgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 714 ggaatgaagacagacacatggacacaagtagagaaaatcaggtatcatgtaggttgtgaa 655

                                                                       
Query: 181 tcctctgatggaatgattctgattattcagcaacctgacctctacatgtttgttatgtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tcctctgatggaatgattctgattattcagcaacctgacctctacatgtttgttatgtac 595

                                                                       
Query: 241 agcacataggtagggattagttaggctctgtaggtgagtagtctcaggccataagcaatc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 594 agcacataggtagggattagttaggctctgtaggtgggtagtctcaggccataagcaatc 535

                                                                       
Query: 301 tggaaaagacgctgcagttgagttattacacacactgatcagtcactggtaaacaactac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggaaaagacgctgcagttgagttattacacacactgatcagtcactggtaaacaactac 475

                                                                       
Query: 361 ttgaagcagaagaaggcatttccattctaagcctgaatggaagaagccattttttcatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttgaagcagaagaaggcatttccattctaagcctgaatggaagaagccattttttcatta 415

                                                                       
Query: 421 caccttgtcccttgacttggccatcccaatgttaattaccactttatacatacactcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caccttgtcccttgacttggccatcccaatgttaattaccactttatacatacactcaaa 355

                                                                       
Query: 481 gcacccttgtctcccctgaccatgatatcctttcctcattgtaaactcaaataaataaaa 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcacccttgtctcccctgactatgatatcctttcctcattgtaaactcaaataaataaaa 295

                                                                       
Query: 541 cctcctaagccttgcattttagcttctagaactacaagcccaaataaatctttctttaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cctcctaagccttgcattttagcttctagaactacaagcccaaataaatctttctttaaa 235

                                             
Query: 601 tcatatatagtctgtgtcaggtattgtggcagag 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tcatatatagtctgtgtcaggtattgtggcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)