NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAACTCTATAGTCTGTGAAAGACACAGTATAAGAAAA
AACAATTTAAATGTTTTTTATTGCCGAACTCTATGACACTAAATGCCTCA
GAATAAAAGGATCAATTAGCAATATGTGTCAAGCTACCTATATTTTTTGA
GAATCAAAATTTTGAGCATAATTGTGATAGGATATTAATGAAGAGAAGTT
TTTCATGAATAATTTGTGCCTGAGAACTTGAATGCAAAATATACCCCCAA
ACTAACACTAAAGTTAAAATATAGGAAAGAGTATGATAGAAAAACAAATT
TTTAATGGAAGCAATCAAACTAGGAGGAAGGAAATGTTTCATTTCTTTCA
CTAGTTTTTTTCTTTACGGTGATAAGATATACAATGGAGGGCATGAGTAG
ACAAGTTATTATGAAAATACTAATGATATAATAATAATAGCAACAACAAC
AACAAATAAGCTGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTCCA
GGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGNCNGNCTGGTCTACAG
AGTGAGTTCCAGGACAGCCAGGGCTACATAGAGAAACCCTGTCTCGNTAC
AAACCNAATAATAATAATAGGAATATATTATAGTTATATTAATATATAAG
CCTAAATCTCTTGATGACATGATTCTCTACCTCTTTTCCTCAATGAAAGA

AAAACACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATCTGCTTCAGAGCTAC
TAAGAGCTGGCTTCCTGAGCTCATCTAGTGACGAGTATCTCCTAGAGACC
TCCGCTAATTGATCTTTTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAAT
CTCTCCCCAGGTATTCTTACCTGACCTAAACTTTTCCTCGGGTTCAAGAC
CCTTGGAAAGGCCTGTATACTTATTTTGTGAACCATATTTTCTCTTTGCT
CCTATTCTCTCTCCCCGCTTTACTTCTGATAGATTGTCCTGAACTTCATC
CAGAATTTTCAGCCCTATCTTAATCACCTGATAACATGTGAAAAAGAACA
AAAGGGCTCCTAACACTAGAAAAAATTCAAGGCCAAACATACCTTGTAAA
GCTATTTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAG
TTCAAGACCAGACTTACCTTGTAAAGCTGTACTCACTGGTACTCCTGTTC
CCCAGCTGAAAAGTTCTGAATTCATGCAGTTGAATCCTTCTCAACAGTCT
GTTTTACGGGAACCTTTATTACCGTGACCCGCAGTTCTGGTTCCGGAATG
AGGGATCTTCCTTGCGCCGGTCCCGAGTTTTCTTGTATTTTCTCGTCCCG
GATTTCAGCACCAACTCTTATACGCGTTCTCACGACCGGC

Query= MSMg01no453_k24.b1 MSMg01no453_k24.b1 CHROMAT_FILE:
MSMg01no453_k24.b1 PHD_FILE: MSMg01no453_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:38 2005
         (534 letters)



>mm_chr10_115208345_115209282
          Length = 938

 Score =  675 bits (349), Expect = 0.0
 Identities = 464/537 (86%), Gaps = 61/537 (11%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaactctatagtctgtgaaagacacagtataag-----aaaaaacaatttaaat 59
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 767 gaattccaactctatagtctgtgaaagacacagtataagaaaaaaaaaaacaatttaaat 708

                                                                       
Query: 60  gttttttattgccgaactctatgacactaaatgcctcagaataaaaggatcaattagcaa 119
           |||||||||||||||||||||||||||||||||||||||| |||||||            
Sbjct: 707 gttttttattgccgaactctatgacactaaatgcctcagagtaaaagg------------ 660

                                                                       
Query: 120 tatgtgtcaagctacctatattttttgagaatcaaaattttgagcataattgtgatagga 179
                   ||                   |||     |||||| ||||||||||||||||
Sbjct: 659 --------aa-------------------aat-----ttttgaccataattgtgatagga 632

                                                                       
Query: 180 tattaatgaagagaagtttttcatgaataatttgtgcctgagaacttgaatgcaaaatat 239
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 631 tattaataaagagaagtttttcaggaataatttgtgcctgagaacttgaatgcaaaatat 572

                                                                       
Query: 240 acccccaaactaacactaaagttaaaatataggaaagagtatgatagaaaaacaaatttt 299
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct: 571 acccccaaactaacactaaagttaaaatataggaaagaatatgatagaaaaagaaattgt 512

                                                                       
Query: 300 taatggaagcaatcaaactaggaggaaggaaatgtttcatttctttcactag---ttttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 511 taatggaagcaatcaaactaggaggaaggaaatgtttcatttctttcactagtttttttt 452

                                                                       
Query: 357 ttctttacggtgataagatatacaatggagggcatgagtagacaagttattatgaaaata 416
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 451 ttctttatggtgataagatatacaatggagggcatgagtagacaagttactatgaaaata 392

                                                                       
Query: 417 ctaatgatataataataatagcaacaacaacaacaaataagctgggcagtggtggtgcac 476
           |||||||||||||||||||||||||||||||||||||||||||||   |||||||||  |
Sbjct: 391 ctaatgatataataataatagcaacaacaacaacaaataagctgg---gtggtggtg-gc 336

                                                                    
Query: 477 gcctttaatcccagcact--ccaggaggcagaggcaggcggatttctgagtttgagg 531
           ||||||||||||||||||     ||||||||||||||| || |||||||||||||||
Sbjct: 335 gcctttaatcccagcacttg---ggaggcagaggcaggtgggtttctgagtttgagg 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 938
Length adjustment: 10
Effective length of query: 524
Effective length of database: 928
Effective search space:   486272
Effective search space used:   486272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)