BAC Information

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BAC

Clone NameMSMg01-454C07
Chromosome10 (Build37)
Map Location 92,478,921 - 92,479,399
singlet/doubletsinglet
Overlap gene4930485B16Rik
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872
Downstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454C07.T7 (MSMg01no454_c07.b1)MSMg01-454C07.TJ (MSMg01no454_c07.g1)
ACCAG540989AG540990
length739752
length of high quality
(start - end)
479 (78 - 556)404 (74 - 477)
definitionCHROMAT_FILE: MSMg01no454_c07.b1 PHD_FILE: MSMg01no454_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:14 2005CHROMAT_FILE: MSMg01no454_c07.g1 PHD_FILE: MSMg01no454_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCAATACCGAAAAGGCTCAAGCTCCTGAAATGTATTTTTCT
ATTTTCACACTTCGTTACTGGAAGCGAATGCCTTAATTGAGAAGGTCGAA
GCAGAACAAAATGCCCTATATTCCTATCAGAAGTTCTTGGGGAGCTCAAA
AATAAAGAAGAGCAGAATTCCTCCCCCACCCATCCTGCTGGCCCGGACTC
ACTGCTCTGTGACCCTGAAGCCCGCGCCGTTCATCTCAGAGGTTAAGGTA
CCGTGCCCTCCCAGGTGCTGTCCCCACGCCACACGACCTAAGCGCTCCCG
TGACTATAGTAACCCTTACCACTGTCGCTCTCAGGACCCAAATAATCTTA
CTTATAAGCACCAAACACCAGATATTTAGTATTTTCATGTCTTATCTATA
CTTAATTTATTCATGATATTCTCCCTTTATGAATTGTCTTCTAAAGCTAT
GTCAAACACACGGGAAGAGAAAAAACAGTTCCCTCTGTGTGCCTTTGTCA
CAGTGAAACTGTGCTCAAGGTAGAGAGCTGAAGCAGAATCAGACACTGGG
AGGAGGCTGTCTCCTCCGAGAGCCAGCGTTGGGGATTAAGCAACAGGATA
TTTAAATTGTAATGTTGCGGGTCTAGAGAATCTGTGTATATTCCCCCCAA
GTCCAATGTTGTAAATAAGACAAAAAGGGTGATGTTTCG
TTTCGATGATAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCAGCGGAATTCTCACCCGAGGAATACCAAAAGGC
TGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGC
AAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGATGGGATTGCAAGCTTGTACAACAACTCTGGA
AATCAGTCTGGCGGTTCCTCTGAAAATTGGACATAGTACTACCGGAGGAT
CCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCATATGTCCCTCAACAGAGGAATGGATACTAAAA
TATGTGGTACATTTACACTATGGAGCACTACTCAGCTATTATAAAGAATG
AATTTATGAAATTCCTATGCCAATGTTTGGACCTGCGAGGGCATCTTCCT
GAGTGAGGTAACCTTTTCCCAATTGAACTTCAATGAATTGTACTTTTCTG
ATCAAGTGTATTATTATTCCCCTAAAACCTTACTATTTGTCTAGACTATT
AAGGCTATAATACTGTTTAAAATTCCCTTGGATCCTTGACTTTAATATAC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_c07.b1 MSMg01no454_c07.b1 CHROMAT_FILE:
MSMg01no454_c07.b1 PHD_FILE: MSMg01no454_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:14 2005
         (479 letters)



>mm_chr10_92478721_92479599
          Length = 879

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctcctgaaatgtatttttctattttcacacttcgttactggaagcgaatgccttaat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 679 aagctcctgaaatgtatttttctattttcacacttcgttacaggaagcgaatgccttaat 620

                                                                       
Query: 61  tgagaaggtcgaagcagaacaaaatgccctatattcctatcagaagttcttggggagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgagaaggtcgaagcagaacaaaatgccctatattcctatcagaagttcttggggagctc 560

                                                                       
Query: 121 aaaaataaagaagagcagaattcctcccccacccatcctgctggcccggactcactgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaaataaagaagagcagaattcctcccccacccatcctgctggcccggactcactgctc 500

                                                                       
Query: 181 tgtgaccctgaagcccgcgccgttcatctcagaggttaaggtaccgtgccctcccaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgaccctgaagcccgcgccgttcatctcagaggttaaggtaccgtgccctcccaggtg 440

                                                                       
Query: 241 ctgtccccacgccacacgacctaagcgctcccgtgactatagtaacccttaccactgtcg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgcccccacgccacacgacctaagcgctcccgtgactatagtaacccttaccactgtcg 380

                                                                       
Query: 301 ctctcaggacccaaataatcttacttataagcaccaaacaccagatatttagtattttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctctcaggacccaaataatcttacttataagcaccaaacaccagatatttagtattttca 320

                                                                       
Query: 361 tgtcttatctatacttaatttattcatgatattctccctttatgaattgtcttctaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtcttatctatacttaatttattcatgatattctccctttatgaattgtcttctaaagc 260

                                                                      
Query: 421 tatgtcaaacacacgggaagagaaaaaacagttccctctgtgtgcctttgtcacagtga 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgtcaaacacacgggaagagaaaaaacagttccctctgtgtgcctttgtcacagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)