Query= MSMg01no454_e04.b1 MSMg01no454_e04.b1 CHROMAT_FILE:
MSMg01no454_e04.b1 PHD_FILE: MSMg01no454_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:24 2005
(578 letters)
>mm_chr10_103562060_103563037
Length = 978
Score = 1038 bits (537), Expect = 0.0
Identities = 565/577 (97%), Gaps = 6/577 (1%)
Strand = Plus / Plus
Query: 5 gaattcactatc---ttccagcgtaaactgtagtttcatataatagagctttgaaatctg 61
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatcaaat---agcgtaaactgtagtttcatataatagagctttgaaatctg 261
Query: 62 ctctgttgaaatctgcctgtagataagtgttttggcctttgttctgtaacacagacaggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctctgttgaaatctgcctgtagataagtgttttggcctttgttctgtaacacagacaggg 321
Query: 122 tctaaacatgtggaagaaatcatcagaaacgtgaacaagattttattcctagacatataa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctaaacatgtggaagaaatcatcagaaacgtgaacaagattttattcctagacatataa 381
Query: 182 atgagcatattctggacaacagcaatgttatcagacaaatacatcctccatctgggaacc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgagcatattctggacaacagcaatgttatcagacaaatacatcctccatctgggaacc 441
Query: 242 accctgcagttgtccagttgcttggcattcatgctagtcagtgtctgccaatgcaaagaa 301
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 442 accctgcagttgtccagttgcttggcattcatgcaagtcagtgtctgccaatgcaaagaa 501
Query: 302 gcagtatccggtgatctttttttcacagtatagtcagccaaagatgcatatgttatagcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcagtatccggtgatctttttttcacagtatagtcagccaaagatgcatatgttatagcc 561
Query: 362 aatgccgcttctcctctgagtaaatgagtccagcaacatgccagcctcataactggatct 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatgccgctactcctctgagtaaatgagtccagcaacatgccagcctcataactggatct 621
Query: 422 tgacagatacactattacccatattttcacttgacttttaatgttctttctagggaaaag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgacagatacactattacccatattttcacttgacttttaatgttctttctagggaaaag 681
Query: 482 tataaagatcaattcctgagcattgtatatcatgtgaaagtcatggaaaatcaaaagtgt 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tataaagatcaattcctgagcattgtatatcatgtgaaagtcatggaaaatcaaaagtgc 741
Query: 542 actgacttattgaatccatctctgagcttattactgt 578
||||||||||||| ||||||| | |||||||||||||
Sbjct: 742 actgacttattgattccatctttaagcttattactgt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_e04.g1 MSMg01no454_e04.g1 CHROMAT_FILE:
MSMg01no454_e04.g1 PHD_FILE: MSMg01no454_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:24 2005
(454 letters)
>mm_chr10_103774716_103775569
Length = 854
Score = 847 bits (438), Expect = 0.0
Identities = 450/454 (99%)
Strand = Plus / Minus
Query: 1 catgaaattaattacttctgagaattaattagcttttcccagagatgagctccctaattg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 526 catgaaattaattacttctgagaattaattagtttttcccagagatgagctccctaattg 467
Query: 61 tttatccaatgcaaaattgttatctctaaaagcatactcatacaggtaatagtaaatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttatccaatgcaaaattgttatctctaaaagcatactcatacaggtaatagtaaatgaa 407
Query: 121 catagcatgttatatttactcattttaagttcatgatatacatactcattacatatgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 catagcatgttatatttactcattttaagttcatgatatacatactcattacatatgtat 347
Query: 181 gtaacattaaaattattaaaccgtacttactaaagaaaatgaagccataatttaaggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtaacattaaaattattaaaccgtacttactaaagaaaatgaagccataatttaaggggc 287
Query: 241 tgcatttggaggtgggggttaaacagtagtaaaatgcaagtaaacatttgtattaaaata 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 286 tgcatttggaggtgggggttaaacagtagtaaaatggaagtaaacatttgtattaaaata 227
Query: 301 caaatttaaatatttttcagcaggattaatataattacaacatttctttttccatttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 226 caaatttaaatatttttcagcaggattaatataattacaacatttctttttccctttcct 167
Query: 361 tcttccaaacacctccatatatttctttcactacttcaaattcatgaacacttttcatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tcttccaaacacctccatatatttctttcactacttcaaattcatgaacacttttcatta 107
Query: 421 attactatcacatagatttgtgtgtgtgtgtgtg 454
||||||||||||||||||||||||| ||||||||
Sbjct: 106 attactatcacatagatttgtgtgtatgtgtgtg 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
