BAC Information

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BAC

Clone NameMSMg01-454P02
Chromosome10 (Build37)
Map Location 58,168,899 - 58,347,622
singlet/doubletdoublet
Overlap geneLOC624335, LOC100039099
Upstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar
Downstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P02.T7 (MSMg01no454_p02.b1)MSMg01-454P02.TJ (MSMg01no454_p02.g1)
ACCAG541599AG541600
length763763
length of high quality
(start - end)
414 (50 - 463)390 (80 - 469)
definitionCHROMAT_FILE: MSMg01no454_p02.b1 PHD_FILE: MSMg01no454_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:18 2005CHROMAT_FILE: MSMg01no454_p02.g1 PHD_FILE: MSMg01no454_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,168,899 - 58,169,292)(58,347,233 - 58,347,622)
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATTTTCCCCAGACTGGCTTTAGATGCTCAGAGATCTAC
CTGACTCTACCTTCAAGTGCTGGAATTAAAGTTGTTTTCTACCACACCCA
GCTTAATCTGTGTCTTTTAAATGTGGAATAAAATCCACAAATATTATTAT
TGAAAATGGTTTAATTCCTGTAATTTTGTTATTTTGTGTTTTAAGACTTC
CTTTGATTAACTGTCCTGCATTGCTTATTTATTTCTTATGACATCTCAGG
TGTGTTTATTCTTTTCCCCAGATGGAAGCATTTCTACCAATATCGTCTGT
TGAAATGGCTTACTGGTCATTCATTACTTTAACTTGNTTTTAATCACAGA
AAAAAATCACAGAAAAATATTTCTCCTTCAATTTTAATGTTATTGTACTG
GGTCGATGACTGTAGTCTTTTAGAAGTTAGAAAACAATTTTTTTCAGGGT
ACTCTGGTTTCTAAAGTTTCTGTCTTAAAAAATCAGGTTATTTATGATGG
ATCTGCCTTTTTAAAGTTGCTCGGATTCTTCTCTCTAACAACATTCAATG
GCCTTTTCTTTATTCTACGCTCCAAGGGTTTTAACCATGTCTAGGGTGAA
TTTTTTTTTCTTTTCCCTTTTTCATTGTACTTTATCACCACTTCCTCTTT
CTTTTACCTTCCCTCCCCCCTCCCTTTCGCTGAATATTAATTTTCCTTTT
CTCATTTTTTTTC
NNCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGCCCACAGAAGTCCTG
AGAGATTTGATGAATGTGCGTAATTGGTACCCTGCCTGGGATCCTGCAAC
AGTAATGGGGCATTAAGAAAGAATTGAAAATATCTAAATACAGAATGGGC
CTTAGCTAATGTATCAACAATAGGGCTGGGGTATGAGGTATGTAGCCACT
CTCCCTTATATATTCTCAAACATTCTAAATGTAAAGGTCTATTTAAAGGA
AGAAGTATGTGGCTTAAAGATACGTATCTGTCATTCATTGCTGGATAATG
GCATAGACTTCTTAAAACTCTTGATTTCCTAAGCCACAGGGACACTGGGT
CCATTGTCTTCTAGTGTAATATTTGGTCAATGGTCTTGCTTCCTGGCACA
AAGCTCCCAATATCCTTAAGATTATTTTAGATGATAGGAATATGTTTGTC
CTATTGCGGTTGTTTTCCGGTGAACCTCTGGTCTGATTTATTATCCATAC
AGGCTTTCTTACCTCTATAATTTAAGGTTTTTCTGGCCCCAAACTTGTAT
TGGCCCCACCCCTATTGCCCGTTTTGTTTCACTCCGTTTTTACACCGACT
TCCTCAATCATGTTTGCCTTTTCGCCCCCCTCTTTTTTTACATTATTTCC
CTTTCTTACCCTCCTTATTATTATTTTTCCCCGCCCGCTATTTCTTTCCT
CTTATATTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p02.b1 MSMg01no454_p02.b1 CHROMAT_FILE:
MSMg01no454_p02.b1 PHD_FILE: MSMg01no454_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:18 2005
         (414 letters)



>mm_chr10_58168679_58169492
          Length = 814

 Score =  756 bits (391), Expect = 0.0
 Identities = 393/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  ccagactggctttagatgctcagagatctacctgactctaccttcaagtgctggaattaa 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ccagactggctttagatgctcagagatctacctgactctaccttcaagtgctggaattaa 280

                                                                       
Query: 81  agttgttttctaccacacccagcttaatctgtgtcttttaaatgtggaataaaatccaca 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agttgttttctaccacacccagcttaatctgtgtcttttaaatgtggaataaaatccaca 340

                                                                       
Query: 141 aatattattattgaaaatggtttaattcctgtaattttgttattttgtgttttaagactt 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aatattattattgaaaatggtttaattcctgtaattttgttattttgtgttttaagactt 400

                                                                       
Query: 201 cctttgattaactgtcctgcattgcttatttatttcttatgacatctcaggtgtgtttat 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cctttgattaactgtcctgcattgcttatttatttcttatgacatctcaggtgtgtttat 460

                                                                       
Query: 261 tcttttccccagatggaagcatttctaccaatatcgtctgttgaaatggcttactggtca 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcttttccccagatggaagcatttctaccaatatcgtctgttgaaatggcttactggtca 520

                                                                       
Query: 321 ttcattactttaacttgnttttaatcacagaaaaaaatcacagaaaaatatttctccttc 380
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttcattactttaacttgtttttaatcacagaaaaaaatcacagaaaaatatttctccttc 580

                                             
Query: 381 aattttaatgttattgtactgggtcgatgactgt 414
           ||||||||||||||||||||||||||||||||||
Sbjct: 581 aattttaatgttattgtactgggtcgatgactgt 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no454_p02.g1 MSMg01no454_p02.g1 CHROMAT_FILE:
MSMg01no454_p02.g1 PHD_FILE: MSMg01no454_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:18 2005
         (390 letters)



>mm_chr10_58346857_58347646
          Length = 790

 Score =  731 bits (378), Expect = 0.0
 Identities = 387/390 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagcccacagaagtcctgagagatttgatgaatgtgcgtaattggtaccctgcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tcacagcccacagaagtcctgagagatttgatgaatgtgcgtaattggtaccctgcctgg 707

                                                                       
Query: 61  gatcctgcaacagtaatggggcattaagaaagaattgaaaatatctaaatacagaatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gatcctgcaacagtaatggggcattaagaaagaattgaaaatatctaaatacagaatggg 647

                                                                       
Query: 121 ccttagctaatgtatcaacaatagggctggggtatgaggtatgtagccactctcccttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ccttagctaatgtatcaacaatagggctggggtatgaggtatgtagccactctcccttat 587

                                                                       
Query: 181 atattctcaaacattctaaatgtaaaggtctatttaaaggaagaagtatgtggcttaaag 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 586 atattctcaaacattctaaatgtaaaagtctatttaaaggaagaagtatgtggcttaaag 527

                                                                       
Query: 241 atacgtatctgtcattcattgctggataatggcatagacttcttaaaactcttgatttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atacgtatctgtcattcattgctggataatggcatagacttcttaaaactcttgatttcc 467

                                                                       
Query: 301 taagccacagggacactgggtccattgtcttctagtgtaatatttggtcaatggtcttgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 466 taagccacagggacactgggtccattgtcttctagtgtaatatttggtcaatggtcttgg 407

                                         
Query: 361 ttcctggcacaaagctcccaatatccttaa 390
           ||||||||||||||||||||||||| ||||
Sbjct: 406 ttcctggcacaaagctcccaatatctttaa 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)