BAC Information

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BAC

Clone NameMSMg01-455G14
Chromosome10 (Build37)
Map Location 55,215,527 - 55,216,092
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041898, LOC382460
Downstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455G14.T7 (MSMg01no455_g14.b1)MSMg01-455G14.TJ (MSMg01no455_g14.g1)
ACCAG541957AG541958
length7311,570
length of high quality
(start - end)
578 (42 - 619)---
definitionCHROMAT_FILE: MSMg01no455_g14.b1 PHD_FILE: MSMg01no455_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:54 2005CHROMAT_FILE: MSMg01no455_g14.g1 PHD_FILE: MSMg01no455_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAAAAGAGGATCCGCGGAA
TTCCTTTTACCTTAGATCTTTATTTATCCCCCCTGTCAAGTATTACTGAG
GAAGCACTTAGTTAAACATAGCATCATACCCCACCAGATCCAATATAAGT
GTATCTCAAAATCAATGTTCTGCATTCTCCCTTGAGTAGTTAAACCCACA
CTTCTGCATGCTTTCCTTTCTTATGGATTCCCATTTTTTCCTAACTTTTA
TGCCCAAACCTCTTGTAAAATATCTTTAATAAAGTTTCCAACTCTGCATT
ATAAACTATCTTTCTAGTCCTGAAATTCTTTTCAGTATTGAAGGTATAGA
TTCCACATTGGACTCAGTATCAGCCCTTAAACTCTATAGGAACTACTCAA
GATGACAATAGGGAGTTGTGTCACCATTTTTTACTCCCCCCTCCCCCAAT
ACTGACAAGAGTCATAGGATCTATAAAGTGTCAAAAATGTTATAACATGC
AAATGAGCTCTAACAAACACTTGTACAACACTATTCTCTTTGCCTTTCTG
TGTCTGTGTCTCTGTCTATGTCTCTGTCTGTCTGTCTATCTGTCTCTGTC
ACACACACACACACACACACATACATATATACTTTTATTTAGTTTGGCCA
CATTCTGAAGTGCTCCATTTCCTAAGATATGCAACAGAATCACTACAAGA
GCAACCTATATACTCATATGAATAGGGTATN
CCCCTAGGATTCCCGAGGTGTGCGTATTGGCTTGGGAGGAGANCACTCTA
AAACGCACTGAATAAGNGCTCCTGCCTAGCCCTGACGCGGCGCAGAGGCG
CAGTGTGTAGTGTGTGTGTTGGGNTGGGCGGGGGAGGTGTCCTTACGTAC
TAAAAAGAGGTAATTGGGTCGGGGTCGTGTGGCTGCGGATGTACCCTGGC
ATGGAGTCAGAGTATAAAGAGGGCGAATATAATAAAGTATAAAATTAGAG
CAGTAATAACAGGATACGTTAAGGATGAAACGAAGGAAGAAGCGATGCCT
TTGAATAATACCGAGACACAACCCTTCCGTCCGCGTAATATAGTTGATNA
AAGCTCTCCCTGTATATATCTACCTGCATCCTTCTTCTTGCGCTGCGCAC
CTGCGGTGTGCTTTCCCACTCGTACCTCTATACTACCCCACCAACACTAA
AGAATTTTGAGTATAATGTACTTTGTCCGCGAGAGCATTGTAATAGAAAG
ACGCGCCGAGCGCACAGCCGATACAATATTATCGCACAGATGAGAGTATC
TCGCTGCTAAATTCTATTAAATAGATAAACGTGTGACGTGCCACTGGTAG
CGCACGGAGGGAGAACGTGATCAACACCCCGCTCTATGCTCTTCGTGTAG
CCGGCGGAGTGCATCTCCTCTGTTTAGTAGTGGTATACATACCCAGATGC
ACCAACATTACATGATCGATATAGGGCGGCGCCACCTTCTCTTGTGTGTA
GTTCTGTTTCACGCGCGCGGCATGGCTGCTGCGAAGTAGCATGGTGAAGA
GAGTGTCGCCCGCCCGAGAGAATACGCCAAGACGGGTTGTCGGCGTGTGG
GTGATGTATTAGTTGATATGACATTCTTCTTCAGCTGTCGGGTCGCAACA
AATGTAGGGTGGGATAAATATGCGAGATCGAGGGAATGAAGAACGGGTAG
GGGTGTTATAGAAAACGGCGTAGTTGGCGAGCGGGAACGCGAAGGCAAGT
TGACTGATCTCTCCGACCGGTAATGCATACACTATTCGCGCATTATGTAG
TCTACCGTGAGGTGGTTCGGGTGGAGAGTTGGCGGTCCACATCAATTAAT
ACTTATGACCAACACTGTTTTGTTCACCAGTGGGCGTGAATGTAGAATGA
GTGAAGTACAGACCGCGGCCAACCACACATAAGATAGATGGAGCGCGGGA
TGCGCGGAGTACGCGCGAGCTCTCATATTGTATACACATATAAGAAGGTA
GCAATCTTATACATATCGTATTCATGATGTTCAACCGTCAGCTCACAGGC
ACGACGCGACGTCATCTCTTATAACGCACGAACATCACACCTGCGTGTAT
GGTAGCCGACGATGAATGTTCGCGCTGCGCCCGCGTGATATGCGCGAAGT
GTATGAATTGATTCTCGACACGGCTACTCTCGAATCTCTATCCACCGATA
GACTATGTCACGACTACTATTGTTTCTCATGTGTGCTCTCTCGACACACT
TCTGTATATCAGATACGATAAACGCACGTCGCTGAGGTGTATATGATGAC
AACTTAACATATATGTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_g14.b1 MSMg01no455_g14.b1 CHROMAT_FILE:
MSMg01no455_g14.b1 PHD_FILE: MSMg01no455_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:54 2005
         (578 letters)



>mm_chr10_55215388_55216365
          Length = 978

 Score =  959 bits (496), Expect = 0.0
 Identities = 551/572 (96%), Gaps = 6/572 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccttttaccttagatctttatttatcccccctgtcaagtattactgaggaagcac 66
           |||||||||| |  ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 705 gaattcctttgaggttagatctttacttatccaccctgtcaagtattactgaggaagcac 646

                                                                       
Query: 67  ttagttaaacatagcatcataccccaccagatccaatataagtgtatctcaaaatcaatg 126
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttagttaaacatagcaccataccccaccagatccaatataagtgtatctcaaaatcaatg 586

                                                                       
Query: 127 ttctgcattctcccttgagtagttaaacccacacttctgcatgctttcctttcttatgga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttctgcattctcccttgagtagttaaacccacacttctgcatgctttcctttcttatgga 526

                                                                       
Query: 187 ttcccattttttcctaacttttatgcccaaacctcttgtaaaatatctttaataaagttt 246
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 525 ttcccattttttcctaacttttatacccaaacctcttgtaaaatatctttaataaagtct 466

                                                                       
Query: 247 ccaactctgcattataaactatctttctagtcctgaaattcttttcagtattgaaggtat 306
           |||| |||||||||||||||| ||  ||||||||||||||||||||||||||||||||||
Sbjct: 465 ccaattctgcattataaactagctagctagtcctgaaattcttttcagtattgaaggtat 406

                                                                       
Query: 307 agattccacattggactcagtatcagcccttaaactctataggaactactcaagatgaca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agattccacattggactcagtatcagcccttaaactctataggaactactcaagatgaca 346

                                                                       
Query: 367 atagggagttgtgtcaccattttttactcccccctcccccaatactgacaagagtcatag 426
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 345 atagggagttgtgtcaccattttttactctcccctcccccaatactgacaagagtcatag 286

                                                                       
Query: 427 gatctataaagtgtcaaaaatgttataacatgcaaatgagctctaacaaacacttgtaca 486
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 285 gatctataaagtgtcaaaaatgttataacatgcaattgagctctaacaaacacttgtaca 226

                                                                       
Query: 487 acactattctctttgcctttctgtgtctgtgtctctgtctatgtctctgtctgtctgtct 546
            |||||||||||||||||||||||||||||||||  ||    ||||||||||||||||||
Sbjct: 225 tcactattctctttgcctttctgtgtctgtgtct--gt----gtctctgtctgtctgtct 172

                                           
Query: 547 atctgtctctgtcacacacacacacacacaca 578
           ||||||||||||||||||||||||||||||||
Sbjct: 171 atctgtctctgtcacacacacacacacacaca 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)