BAC Information

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BAC

Clone NameMSMg01-455J10
Chromosome10 (Build37)
Map Location 50,389,438 - 50,390,005
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455J10.T7 (MSMg01no455_j10.b1)MSMg01-455J10.TJ (MSMg01no455_j10.g1)
ACCAG542093AG542094
length722729
length of high quality
(start - end)
565 (72 - 636)510 (77 - 586)
definitionCHROMAT_FILE: MSMg01no455_j10.b1 PHD_FILE: MSMg01no455_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:09 2005CHROMAT_FILE: MSMg01no455_j10.g1 PHD_FILE: MSMg01no455_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAGAGGATCCG
CGGAATTCCTGATTTCTCCAAGACTTTTACCATGAAGGGGTGTTGAATTT
TGTCAAATGCTTTCTTAGCATCTAATGAGATGATCTTGAGCTTCTTGAAG
TTCAAGAAGAAGGAAGACCAACGTGTCTTCAGTCCTTAGAAGGGGGAACA
AAATACTCAGATAGGAAATATGGAGACAGTGTAGAGCAGAAACAGAAGGA
AAGGCCATCCAGAGTCTGCCCCACCTGGGGACCCATCTCATATATACTCA
CCAAACTCAGACATTGGTTAGTTGCAAAGAAGTGCTTGCTGTCAGGAGCC
TGTAGGAAATGGAAGGAATACATGATGTAATTATATAATAATTCCCAAAA
TAGAAGAAATGGGAAATATTCTATGGCTTCCCATCTTCTCCCTCTTTGCT
ATAACTACTGTGTAAATAATGTTTTTAATTCTTTAAAAGTCAGTATAAGG
TTTTCACAGATTCATTTCTTAATTGCCTGTAGTTAGTTCTTCCTGTAGGG
TCGAGACCTCCACACAAGGGATGCCAAGAAGTGCTTGCTGACAGGAGCCT
GATATAGCTGTCTTTTGAGAGGCTCTGCCAGAGCTTAACTAATATACTAG
CGAATGCTCGTAGCCAACCATTGGACTGAGCACTGGGTCCCCAAGGAGGA
GTTAGAGAAGGAGCTGAAGGGG
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTTAAATCAACTATG
CATCCAACAGAGGGCTAATATCCAAAATATATAACCAACTCAAAAATTTA
GATATCAAGAAAAGAAATAACCCCATTATAAAATGGGGCACAGATCTAAA
AAGAAAATTCTCAATAGAGGAAACTCAAATGACTGAGCAATAGTTACAGA
TATATCCAACATCCTTAGCAAGCAGTGAAATGCAAATCAGAACTCTTTTG
AGATTTCATCTTACAACTGTGAGGATGGCTATAAAACAAGTGACAGCTCA
TGCTGGCTCATCCATTGCTGGTGGGAATGCAAGATTATACAGTTACTATA
GCAACAATGGGAGGTCCTTAGGAAGAACGAAATAGATCTACCTCAAAATC
CAGTTACCATTCTTGGGCATATCCTCTAAGGATGCTTCATCTTACCATAG
AGAAATTATTCAATCCTTGTTCATTATGGTTCTATTCCTAAGAGTCAGAA
ACTGGAAACAACTTAGATGCCCCTTAACAGAAGAATGGATAAAGACNATG
TAGTACATTTATACAATGGAGTATTACTTAGCCACTAAAAATAAAGTCAT
GAAATCCATAGGTAAATGGATGGAACGAGAAAAAAATTAGTGAGGGTAAA
GTTAATGATAACTAAGATATAATATGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_j10.b1 MSMg01no455_j10.b1 CHROMAT_FILE:
MSMg01no455_j10.b1 PHD_FILE: MSMg01no455_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:09 2005
         (565 letters)



>mm_chr10_50389238_50390205
          Length = 968

 Score = 1023 bits (529), Expect = 0.0
 Identities = 558/569 (98%), Gaps = 5/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacttttaccatgaaggggtgttgaattttgtcaaatgctttcttagcatctaatgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacttttaccatgaaggggtgttgaattttgtcaaatgctttcttagcatctaatgagat 260

                                                                       
Query: 61  gatcttgagcttcttgaagttcaagaagaaggaagaccaacgtgtcttcagtccttagaa 120
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gatcttgagcttcttgaagctcaagaagaaggaagaccaaagtgtcttcagtccttagaa 320

                                                                       
Query: 121 gggggaacaaaatactcagataggaaatatggagacagtgtagagcagaaacagaaggaa 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gggggaacaaaatactcagataggaaatatggagacaatgtagagcagaaacagaaggaa 380

                                                                       
Query: 181 aggccatccagagtctgccccacctggggacccatctcatatatactcaccaaactcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccatccagagtctgccccacctggggacccatctcatatatactcaccaaactcaga 440

                                                                       
Query: 241 cattgg-ttagttgcaaagaagtgcttgctgtcaggagcctgtaggaaatggaaggaata 299
           || ||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgggttggt-gcaaagaagtgcttgctgtcaggagcctgtaggaaatggaaggaata 499

                                                                       
Query: 300 catgatgtaattatataataattcccaaaatagaagaaatgggaaatat---tctatggc 356
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 500 catgatgtaattatataataattcccaaaatagaagaaatgggaaatatgattctatggc 559

                                                                       
Query: 357 ttcccatcttctccctctttgctataactactgtgtaaataatgtttttaattctttaaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcccatcttctccctctttgctataactactgtgtaaataatgtttttaattctttaaa 619

                                                                       
Query: 417 agtcagtataaggttttcacagattcatttcttaattgcctgtagttagttcttcctgta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 agtcagtataaggttttcacagattcatttcttaattgcctgtagttagttcttcgtgta 679

                                                                       
Query: 477 gggtcgagacctccacacaagggatgccaagaagtgcttgctgacaggagcctgatatag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggtcgagacctccacacaagggatgccaagaagtgcttgctgacaggagcctgatatag 739

                                        
Query: 537 ctgtcttttgagaggctctgccagagctt 565
           |||||||||||||||||||||||||||||
Sbjct: 740 ctgtcttttgagaggctctgccagagctt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 968
Length adjustment: 10
Effective length of query: 555
Effective length of database: 958
Effective search space:   531690
Effective search space used:   531690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)