BAC Information

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BAC

Clone NameMSMg01-455L11
Chromosome10 (Build37)
Map Location 115,759,659 - 115,876,530
singlet/doubletdoublet
Overlap genePtprb, Kcnmb4
Upstream geneTmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
Downstream geneCnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455L11.T7 (MSMg01no455_l11.b1)MSMg01-455L11.TJ (MSMg01no455_l11.g1)
ACCAG542191AG542192
length731730
length of high quality
(start - end)
563 (70 - 632)569 (74 - 642)
definitionCHROMAT_FILE: MSMg01no455_l11.b1 PHD_FILE: MSMg01no455_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:18 2005CHROMAT_FILE: MSMg01no455_l11.g1 PHD_FILE: MSMg01no455_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,759,659 - 115,760,221)(115,876,210 - 115,876,530)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTTACCGACCTGATGCCTGGACGGAATTACAAGGCTACTGTC
ACTAGCATGAGTGGAGATTTAAAACAGTCATCTTCAATCAAAGGAAGAAC
AGGTAATGGCATTCGCAAATTTTACATTTCACAATGGTCTATCCACAGAA
ATTTGCAAATAGCCACTAAGTGCCTGCCAAGCCTATCATGTACATTCCAG
GACATTATGACCCTTTCTATTGTATTTCCTATTTTGCTAAGTTTCTTCTT
TTGCTTAGGTGTATTTTACTCATCGAAATATATTAGAGAGTAACTTTGAC
ATGAAGTTCTACCTGCAAAAGAGAACGAAGAGGTGGGACACTATTGAGAA
CAGGGAGTGAGGTAGAAAGTATTGTTTTAAATTATTACAAAAGCAGGATA
TTTTGTGATGATTGTAATTTCTAGAGGAAAAGGAGATAGTGACATCATCA
GGAGACGGGGAAGTGTCGTTCAGTGAGGAATGTGGGATCTACAGTGCAAT
GAGAAAATTGGTTTTAGAAAGGAGAATTGATAATTTAACATCAGAGTCAG
CGGTGGAGGGGGGAGAGGTAGGGAGCTTGTGAGTGTCTATGTCATCCCGG
AGACCGTTGCTTATGTGAAGCCCTGGCCTTACAATTGCTGGCTTGTTCTC
AGAGACGTGAAAAGCTGTGGTCCTCATCAAA
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACACTTTCCTTGTTATTCTCCATTGC
CCTGCTAATTAAGGAAGGTCGAAGCCTACCGTTGACCCAGTAGCATTCAG
AGCTTGGCGAATCGTGGAGGACTCCCTTTCACTGGGCAGGGTTCCCCCTT
CTCTGACCTTGTCTGGGGAATTCAACTCCCTCCCCACGCCTCTACCTGCA
GAAAGTCACGTGGTTAGATTACAAGTTTCTCCGGAGAAGGACCTGTCCAG
CTAGCACTCGTTATTCCTGAAATGCTTCCCCGTGCTAACGAGGCATTTCC
AATAAACCCTCAGCCAATGACCTTGGCCCATCTTGGATGTTCCTTCCCTC
CCCTCCTCCCCAAAATTCTATAAGCCTTGAATCAGCCCAAATAAAGTTGA
CCTGCCTCCCTGCAGTTGGTCCTGGTGTGTCTTCTTTGTGTACAGACTCA
ACAGAGTTTTCCTCCCTGCTCCCTTTGCCCTTGAGGGCAGGGAGGGGCAT
GGTTCCAGGCTTTTTCAGTAAAAGCCACCCTTAATAAGCACGCTGTAATG
GTAGACTGGGGATTCTATGGCAAGCACACTGAAGACGCCTTCATCTTTGC
CTTCCCTGGNGAGCGAGCACCTGGAGAGGAGTGAGTTTTTCTTGCGGGTT
TACTCATTTCCATAGGACCCCAGAAAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_l11.b1 MSMg01no455_l11.b1 CHROMAT_FILE:
MSMg01no455_l11.b1 PHD_FILE: MSMg01no455_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:18 2005
         (563 letters)



>mm_chr10_115759459_115760421
          Length = 963

 Score = 1027 bits (531), Expect = 0.0
 Identities = 555/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgcctggacggaattacaaggctactgtcactagcatgagtggagatttaaaacagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgcctggacggaattacaaggctactgtcactagcatgagtggagatttaaaacagtc 260

                                                                       
Query: 61  atcttcaatcaaaggaagaacaggtaatggcattcgcaaattttacatttcacaatggtc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 atcttcaatcaaaggaagaacaggtaatggcattcgcaaattttacctttcacaatggtc 320

                                                                       
Query: 121 tatccacagaaatttgcaaatagccactaagtgcctgccaagcctatcatgtacattcca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatccacagaaatttgcaaagagccactaagtgcctgccaagcctatcatgtacattcca 380

                                                                       
Query: 181 ggacattatgaccctttctattgtatttcctattttgctaagtttcttcttttgcttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacattatgaccctttctattgtatttcctattttgctaagtttcttcttttgcttagg 440

                                                                       
Query: 241 tgtattttactcatcgaaatatattagagagtaactttgacatgaagttctacctgcaaa 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattttactcattgaaatatattagagagtaactttgacatgaagttctacctgcaaa 500

                                                                       
Query: 301 agagaacgaagaggtgggacactattgagaacagggagtgaggtagaaagtattgtttta 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagaatgaagaggtgggacactattgagaacagggagtgaggtagaaagtattgtttta 560

                                                                       
Query: 361 aattattacaaaagcaggatattttgtgatgattgtaatttctagaggaaaaggagatag 420
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 561 aattattacaaaagcaggatattttatgatgattgtaatttctagaggaaaaggggatag 620

                                                                       
Query: 421 tgacatcatcaggagacggggaagtgtcgttcagtgaggaatgtgggatctacagtgcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacatcatcaggagacggggaagtgtcgttcagtgaggaatgtgggatctacagtgcaa 680

                                                                       
Query: 481 tgagaaaattggttttagaaaggagaattgataatttaacatcagagtcagcggtggagg 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 681 tgagaaaattggttttagaaaggagagttgataatttaacatcagagtcagcggtggagc 740

                                  
Query: 541 ggggagaggtagggagcttgtga 563
           |||||||||||||||||||||||
Sbjct: 741 ggggagaggtagggagcttgtga 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_l11.g1 MSMg01no455_l11.g1 CHROMAT_FILE:
MSMg01no455_l11.g1 PHD_FILE: MSMg01no455_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:18 2005
         (569 letters)



>mm_chr10_115875562_115876530
          Length = 969

 Score =  590 bits (305), Expect = e-172
 Identities = 317/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 249 atgcttccccgtgctaacgaggcatttccaataaaccctcagccaatgaccttggcccat 308
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 atgcttccctgtgctaacgaggcatttccaataaaccctcagccaatgaccttggcccat 910

                                                                       
Query: 309 cttggatgttccttccctcccctcctccccaaaattctataagccttgaatcagcccaaa 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 cttggatgttccttccctcccctcctccccaaaattctataagccttgaatcagcccaaa 850

                                                                       
Query: 369 taaagttgacctgcctccctgcagttggtcctggtgtgtcttctttgtgtacagactcaa 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 taaagttgacctgcctccctgcagttggtcctggtgtgtcttctttgtgtacagactcaa 790

                                                                       
Query: 429 cagagttttcctccctgctccctttgcccttgagggcagggaggggcatggttccaggct 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cagagttttcctccctgctccctttgcccttgagggcagggaggggcatggttccaggct 730

                                                                       
Query: 489 ttttcagtaaaagccacccttaataagcacgctgtaatggtagactggggattctatggc 548
           ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct: 729 ttttcagtaaaagccacccttaacaagcacgctgtaatgatagactggggattctacggc 670

                                
Query: 549 aagcacactgaagacgccttc 569
           |||||||||||||||||||||
Sbjct: 669 aagcacactgaagacgccttc 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)