BAC Information

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BAC

Clone NameMSMg01-455O06
Chromosome10 (Build37)
Map Location 23,535,807 - 23,536,348
singlet/doubletsinglet
Overlap gene1110021L09Rik
Upstream geneTcf21, Eya4, Rps12
Downstream geneVnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455O06.T7 (MSMg01no455_o06.b1)MSMg01-455O06.TJ (MSMg01no455_o06.g1)
ACCAG542322AG542323
length721707
length of high quality
(start - end)
546 (48 - 593)553 (58 - 610)
definitionCHROMAT_FILE: MSMg01no455_o06.b1 PHD_FILE: MSMg01no455_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:31 2005CHROMAT_FILE: MSMg01no455_o06.g1 PHD_FILE: MSMg01no455_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGATCCTCCTGCTTCTACCTCCTAAGTGCTGAGATGCTGAGT
ATATGTCACCACGCCAGGGTGAAAGGCAGTCTTTTCAATAAAAATTGATC
ATGCCTTCTAAAGATGAAGAGTTTGGAAGCTGATGTAGATGATACTATTT
AATTTCAGGCAACCCAACTGTACAATTCATTTTTATTACTAGATAGATAG
TCTTACCAGCTTTGGCCCTCAAAGAAAGTTAAAAGATAACGCTAAGAGAT
GGTAATTGCGATGATGTATCTCTGTTTCTATTTTTAACCCAAGAGTCCGA
TCCAGGGAAGCAGTCCTTCTGGAAACTTGTCACCTTACCCAAGATGGGCC
TCCTAGCCTTCGTGATCATCTCTCTCAGCTCCTGCTTCGGCTTCCTGGAC
CCAACCCTGTCTCTCTTTGTCATGGAGAAGGTAAGCACCGTGCTCTGCAT
GTTGGCCCTGATTATGTGCCCTCAGGCTCCTTAGCTGTTCTAAGGAGGGA
GACAGGGAGCTGCGCTCTGGCCCCTCAGTGTTGTTCTTTGAGGGATGCGA
CTCTGTGATCTGGGGCCTGATCCATTAAGAAAAAAATCTTCTCCTAGAGT
CCAGTACACTGTCTCCTTCTACCTAAGACCTTGCTCATGCTGTTCCAGGC
CTGGGTGGTCTGTGCAAGGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCAGAGGAATACCGAAAGGCTGAGAAACACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGA
TTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGT
GGGATTGCAAACTTGTGCAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGTCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTCATGAAATTCCTAGGCA
AATGGTTGGACCTGAAGGGCATCATCCTGAGTGAGGTAACCTGTAGTCTC
CCCTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTAGAGCTTCCTGCTCA
TTCGTTCTGCCATGGCCACTGCTGGGAACCTGCGAAGCCACACACGTGCA
CCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_o06.b1 MSMg01no455_o06.b1 CHROMAT_FILE:
MSMg01no455_o06.b1 PHD_FILE: MSMg01no455_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:31 2005
         (546 letters)



>mm_chr10_23535603_23536548
          Length = 946

 Score = 1025 bits (530), Expect = 0.0
 Identities = 539/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgatcctcctgcttctacctcctaagtgctgagatgctgagtatatgtcacca 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaacctcctgcttctacctcctaagtgctgagatgctgagtatatgtcacca 264

                                                                       
Query: 65  cgccagggtgaaaggcagtcttttcaataaaaattgatcatgccttctaaagatgaagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgccagggtgaaaggcagtcttttcaataaaaattgatcatgccttctaaagatgaagag 324

                                                                       
Query: 125 tttggaagctgatgtagatgatactatttaatttcaggcaacccaactgtacaattcatt 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 tttggaagctgatgtagatgatactatttaatttcgggcaacccaactgtacaattcatt 384

                                                                       
Query: 185 tttattactagatagatagtcttaccagctttggccctcaaagaaagttaaaagataacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttattactagatagatagtcttaccagctttggccctcaaagaaagttaaaagataacg 444

                                                                       
Query: 245 ctaagagatggtaattgcgatgatgtatctctgtttctatttttaacccaagagtccgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaagagatggtaattgcgatgatgtatctctgtttctatttttaacccaagagtccgat 504

                                                                       
Query: 305 ccagggaagcagtccttctggaaacttgtcaccttacccaagatgggcctcctagccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagggaagcagtccttctggaaacttgtcaccttacccaagatgggcctcctagccttc 564

                                                                       
Query: 365 gtgatcatctctctcagctcctgcttcggcttcctggacccaaccctgtctctctttgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgatcatctctctcagctcctgcttcggcttcctggacccaaccctgtctctctttgtc 624

                                                                       
Query: 425 atggagaaggtaagcaccgtgctctgcatgttggccctgattatgtgccctcaggctcct 484
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atggagaaggtaagcaccgagctctgcatgttggccctgattatgtgccctcaggctcct 684

                                                                       
Query: 485 tagctgttctaaggagggagacagggagctgcgctctggcccctcagtgttgttctttga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagctgttctaaggagggagacagggagctgcgctctggcccctcagtgttgttctttga 744

             
Query: 545 gg 546
           ||
Sbjct: 745 gg 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)