BAC Information

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BAC

Clone NameMSMg01-457A19
Chromosome10 (Build37)
Map Location 118,792,439 - 118,792,970
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1
Downstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457A19.T7 (MSMg01no457_a19.b1)MSMg01-457A19.TJ (MSMg01no457_a19.g1)
ACCAG543208AG543209
length7481,709
length of high quality
(start - end)		533 (50 - 582)---
definitionCHROMAT_FILE: MSMg01no457_a19.b1 PHD_FILE: MSMg01no457_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:06 2005CHROMAT_FILE: MSMg01no457_a19.g1 PHD_FILE: MSMg01no457_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGAAGTTCCAACTGTGTAAATTGTTTTAAGTTTAACATC
ACAGCATTTTAAAAGCATGTCTGGGGTTATTTAGTCCAACTATGAAAGCA
ATGGATATGTCATGCTCACTGTTAATTGGTTACTCATGTGTAAAGTCCAA
GTGATACTGCGACTTGGAGAACAAACTTAGTAGGTAACACAGTAGGCTTC
TTTCTACATTTTTAATTCAGTATAGGGGTGCCATCAGAGTTTTTGTCATG
GCCAGTTAGTTCCCCCACCACAATTTGTTCAAGACACTGAAAATGCCACA
ATGCCATTTGATGCAAACAAGGTCACAGGTTTAAACACAGTCTCACGTGT
TGGGATTGCAAGACATTAATTGATTTATTAGGTCATAGTTTTGATAAGCT
AGAATGTTACATTATTTTTAACGCTTCAGAAAAAAATCATAAACTTAAAA
AAGTTTTTGGCCTGAACAGAGACACTGTAGAATATACCCAGATCTGTCTA
GAGATCTGCTGATTAATTTTAAAAAAATATCCAGGGCTTCGTGAAGGGAA
GGAAATGACCATTATAATTATTTGGGGTACTAAAAATTTTCTAGGACAAA
GCATAACTTTCTAATCATTTTTAGTTAAACAAAACAACGAAAACCCCAAA
CAAGAAAGTCAGAGGGCTGGAAAGATGGCTCATTGGTTATGAACACTG

CCCTTCCCCCTCCATCTCTAGACTCATATGCGCGNTCGGCTTCTCCGTGT
CAGCACACACTGCACAGGAGACTCCTCTCTCCCTCTCTCGCGTTATGGAC
CCGGAGGCCTCATCGCGCACGCCTAGCGCATGTCTCGCTGCGCCGCACAA
CTCCCACATCCGACACGACCCGCGCACAGCACAGGGCCCGTGCTGNACTC
GCACAGACGACTCCGCGACACCCCGCGACACACACACCTACTCTACACCC
GCTCGTCTGCGCATCGCACCCTCACGTCTAACGAGATCGTAACGCATAGT
ATCACTAACGAAAGAGAGTGACGGTGGGAATAGTCCTCCTTGTTCGGCGC
GCGACTGCGACACAGACTCTGTCCTGCGTCTACNGTAATACATATGTATC
AAATACACGCAGAGACGTCGGAGAGAGCCCAAGTACCCTGCTACAAACGA
CCTCTCATACTACAACGAACCTCGGACACAGGATTACCCAGACGCACTCC
TCTAGTCTTCGGCCCATTAGACATCGCATACCCGTACGACCATCCCGAAC
CTACGCGATAACAAGCGCAGCACCGATGTGGATGTCTCGTGCGTGCGCAC
GCGGGTGTGGCTGCTATCCTACTCTACTGCCTATCACACCGCGCAACCTC
ATACTATGCATGCTCATCCGTCACGTGCCGTGACGCACGGCACGGACGCA
CAAAGCGCGCCTNCGCGCGAGCGCTCGCCATCCTACTGCTTCATGCTACC
GCGCGCGCCGTAGTCGTCGTTCGGCTGGCTGTGCATGAGGTCGNTGTCTT
GTTAGCGACTTTCTATCGTCGCTCGTCGCACACACACGCCGTGAGTGATA
TAGTATACTAGAGCTATATATGATGTACATTGTATCGTCTCTCCGCTATA
CATACTATTTCGCTGATCNACATACTCGAGGATCTCGATACCATTATACT
ACGCACACAGATGATCGCCGACCACTACGACGCCTTGACTTATATANGAG
CCGCTGCCCCCACGCTCCCGTATAACTCTAATCATAACCTCGCTCTTATA
CACTACCTCATACGCAACGTGTTACGCCTCACCATGAATAACGATCACGC
GACGTTGCAACACTCATATGTACCCAGTTATTGATTANTNATGACAGACG
TCATAATGTATCTACTCACAGATCGACGCCTGCGATTTGACGGATAACAC
ACCGCGCATTGTCTCGCTGTGTGCTAGCTGCATCACTCCCGTACTANTGT
TAGCCNGTGCGCTGGAGACACATATCCTACGCGATANTGTACGCTATCGC
TCGTCGAGAGCGAGTCCACAGAGAGTGCGTACAGTGATGTCACACGAGTA
GCGCCGACGGANTACGCGTATAAATTTAGTGATGTACACATCTGATAGAT
AGATAGTGTATCACGCACATGATACAACCCTGAGTCTATGATCTACTAGA
TGTGCACGCCACGCCACCACGTCTACGACATCACTGATAGTTATCTCTGC
ATGCGCGCGCGCGCGTGATGTGTNTAAGCATCNCATGTGCTGCGCACNAC
GCCCCTCTATTATAGTATGCGAGCTATACTCTCTATCTCACGAAGTTGCT
CAACGCTCGCTGTGTCTGTGCGATCGANTCGATGCNCTGCTATATTTCCT
CACTCTCATNTGTGTATGCTCTTCATATTACTACCATACGCACANCATCT
CCGCTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_a19.b1 MSMg01no457_a19.b1 CHROMAT_FILE:
MSMg01no457_a19.b1 PHD_FILE: MSMg01no457_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:06 2005
         (533 letters)



>mm_chr10_118792235_118793170
          Length = 936

 Score =  946 bits (489), Expect = 0.0
 Identities = 521/533 (97%), Gaps = 5/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgaagttccaactgtgtaaattgttttaagtttaacatcacagcattttaaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgaagctccaactgtgtaaattgttttaagtttaacatcacagcattttaaa 264

                                                                       
Query: 65  agcatgtctggggttatttagtccaactatgaaagcaatggatatgtcatgctcactgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcatgtctggggttatttagtccaactatgaaagcaatggatatgtcatgctcactgtt 324

                                                                       
Query: 125 aattggttactcatgtgtaaagtccaagtgatactgcgacttggagaacaaacttagtag 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 aattggttactcatgtgtaaagtccaagtgatactgcaacttggagaacaaacttagtag 384

                                                                       
Query: 185 gtaacacagtaggcttctttctacatttttaattcagtataggggtgccatcagagtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaacacagtaggcttctttctacatttttaattcagtataggggtgccatcagagtttt 444

                                                                       
Query: 245 tgtcatggccagttagttcccccaccacaattt-gttcaagacactgaaaatgccacaat 303
           ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||
Sbjct: 445 tgtcatggccagttagttcccccaccaca-tttcgctcaagacactgaaaatgccacgat 503

                                                                       
Query: 304 gccatttgatgcaaacaaggtcacaggtttaaacacagtctcacgtgttgggattgcaag 363
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 gccgtttgatgcaaacaaggtcacaggttaaaacacagtctcacgtgttgggattgcaag 563

                                                                       
Query: 364 acattaattgatttattaggtcatagttttgataagctagaatgttacattatttttaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acattaattgatttattaggtcatagttttgataagctagaatgttacattatttttaac 623

                                                                       
Query: 424 gcttcagaaaaaaa---tcataaacttaaaaaagtttttggcctgaacagagacactgta 480
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcttcagaaaaaaaaaatcataaacttaaaaaagtttttggcctgaacagagacactgta 683

                                                                
Query: 481 gaatatacccagatctgtctagagatctgctgattaattttaaaaaaatatcc 533
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 gaatatacccagatctgtctagagatctgctgattaattttaaaaatatatcc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 936
Length adjustment: 10
Effective length of query: 523
Effective length of database: 926
Effective search space:   484298
Effective search space used:   484298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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