BAC Information

Click to search

BAC

Clone NameMSMg01-458G21
Chromosome10 (Build37)
Map Location 35,678,611 - 35,679,230
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041585
Downstream geneLOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458G21.T7 (MSMg01no458_g21.b1)MSMg01-458G21.TJ (MSMg01no458_g21.g1)
ACCAG544262AG544263
length751761
length of high quality
(start - end)
480 (55 - 534)618 (74 - 691)
definitionCHROMAT_FILE: MSMg01no458_g21.b1 PHD_FILE: MSMg01no458_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:01 2005CHROMAT_FILE: MSMg01no458_g21.g1 PHD_FILE: MSMg01no458_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGAACTCTTCTCCTGGGGAACGGTGGTAATAAAGTGTT
CCCACAACACAGACTGTAGAGAAGGATTCAACTGCGTGAATTCAGAACTC
TTCAGCTGGGGAACAGGGTACCTGTAAGTATAGCTTTACAAGGTAAGTCT
GGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTG
GGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAG
GAGCCTTTTTGTTCCTTTTCACATGTTATCAAGCGGTTAAGGCAGGGCTG
AAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGA
GAGAGTAGGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCC
TTTCCACGGGTCTTGAACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACC
TGGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCA
ATTAGCGGAGGTCTCTAGGAGAAGGAGCCTATACTCATCACTAGATGAGC
TCAAGGAGCCAGCTCTTAGTAGCTCTGAAGCAGATGAAGAAATCTCCTCT
GAAGAAACAGACTTGGAGGAGGAAGCAGCTCATTATGAAAGAAAAGGTAC
CAGCTAGATAAATGCTAGCTAATCAGTTAAGGAAAAAGCAAAAGCGGTGG
G
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGGTGTTTCTTAGTGAGTACTTAGC
ATGGAGTATGCATACTGGTAGTTATCTATCAATGACATCGATTTAGCACA
GTTTTCTTTGTCTCTTTGTCTGGCTATGCTTTAGAGTATTTTTCCACACT
AAATAGCAAATACAACTGCTAAAAAACTACAAAATCATAAATAGAGAGAG
CAATGAAAGGAAGAAAGGTAAACGTCTGATTTGGACATTGATAACTATTA
AAATGGAATATTATAAATTTTAAAATCTTACATCCTACTGTTATATGTTC
TGTACAAAATGTGTAATATTTGTGTCCAACCATCATAGAATTTCATTTCT
TCCTTTTTGCTCACTTTTATAATTTTCATCAATTTCTCTCATAAATGACT
ATAGGGTATTCAAATCAAAGTCCAGATGTGTAAATCAATGATTTAATTGA
TGACACATATGTGAATAAATCATAATTTTTTACATAGAATTTTGGAAGAC
TCTCCTGCCTAAGTCCAGCAGATAGATGGTTACAGTGTTTCATCGCTGAG
AAAGATACTCAGATAAGTATTCACATGTGAGGAAATAGATACATTGGGCT
AAATAATGTTAATAATATATTTAAAAGTTCAGAAATGATTTAAAACTTAC
NATTTCTGAGTAATCAAAGAATTGAACTTGCCAGATGCACTTGGCTTTCA
AATATGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_g21.g1 MSMg01no458_g21.g1 CHROMAT_FILE:
MSMg01no458_g21.g1 PHD_FILE: MSMg01no458_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:01 2005
         (618 letters)



>mm_chr10_35678406_35679423
          Length = 1018

 Score = 1125 bits (582), Expect = 0.0
 Identities = 610/620 (98%), Gaps = 2/620 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgg--tgtttcttagtgagtacttagcatggagtatgcatactggtagttatctatca 58
           |||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 825 tgtggtatgtttcttagtgagtacttagcatggagtatgcatactgttagttatctatca 766

                                                                       
Query: 59  atgacatcgatttagcacagttttctttgtctctttgtctggctatgctttagagtattt 118
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 765 atgacatcgatttagcacagctttctttgtctctttgtctggctatgctttagagtattt 706

                                                                       
Query: 119 ttccacactaaatagcaaatacaactgctaaaaaactacaaaatcataaatagagagagc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttccacactaaatagcaaatacaactgctaaaaaactacaaaatcataaatagagagagc 646

                                                                       
Query: 179 aatgaaaggaagaaaggtaaacgtctgatttggacattgataactattaaaatggaatat 238
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 645 aatgaaaggaagaaaggtaaacgtctgatttggacattgataaatattaaaatggaatat 586

                                                                       
Query: 239 tataaattttaaaatcttacatcctactgttatatgttctgtacaaaatgtgtaatattt 298
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 585 tataaattttaaaatcttacatcctattgttatatgttctgtacaaaatgtgtaatattt 526

                                                                       
Query: 299 gtgtccaaccatcatagaatttcatttcttcctttttgctcacttttataattttcatca 358
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtgttcaatcatcatagaatttcatttcttcctttttgctcacttttataattttcatca 466

                                                                       
Query: 359 atttctctcataaatgactatagggtattcaaatcaaagtccagatgtgtaaatcaatga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atttctctcataaatgactatagggtattcaaatcaaagtccagatgtgtaaatcaatga 406

                                                                       
Query: 419 tttaattgatgacacatatgtgaataaatcataattttttacatagaattttggaagact 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttaattgatgacacatatgtgaataaatcataattttttacatagaattttggaagact 346

                                                                       
Query: 479 ctcctgcctaagtccagcagatagatggttacagtgtttcatcgctgagaaagatactca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctcctgcctaagtccagcagatagatggttacagtgtttcatcgctgagaaagatactca 286

                                                                       
Query: 539 gataagtattcacatgtgaggaaatagatacattgggctaaataatgttaataatatatt 598
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 285 gataagtattcacatgtgaggaaatagacacattgggctaaataatgttaataaaatatt 226

                               
Query: 599 taaaagttcagaaatgattt 618
           ||||||||||||||||||||
Sbjct: 225 taaaagttcagaaatgattt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)