BAC Information

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BAC

Clone NameMSMg01-459C11
Chromosome10 (Build37)
Map Location 64,720,767 - 64,721,097
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459C11.T7 (MSMg01no459_c11.b1)MSMg01-459C11.TJ (MSMg01no459_c11.g1)
ACCAG544815AG544816
length544765
length of high quality
(start - end)
163 (71 - 233)483 (68 - 550)
definitionCHROMAT_FILE: MSMg01no459_c11.b1 PHD_FILE: MSMg01no459_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:57 2005CHROMAT_FILE: MSMg01no459_c11.g1 PHD_FILE: MSMg01no459_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGGCCGTAACGACTCCTTTCAAGAGATCGGGATTCATTATCCCA
GTTGTTCTGGTGGTTTGTTTGTTTTGCTTTGTTTGTTTCTTAGAGACTTT
TATGACTGCTTCTATTTCCTTGTGGTTTAAGTCTATTTAAATTATTTATT
TGTCCTGATTTACTTTGCTTATGAATTTATTAGAAATTTGCCATTTCTTT
TAGAGTTTAAAGTTTTGTGGTGTAATAATTTTGAAGATGATTCTGGTAGA
GTAGATGCCTTCGTTTGATCTTATTGACTCCCCCGACTTATGGTTTGAAA
GATTGCCATCTACAATTTCCCAAAACAAACCCCTTTTGGACCTGAGGGTT
GATCCATTGTGAATTACCTGGTTCTATATTTCTGNNNNNNNNNNNNAATT
TCATTAATGNNNATGGGTGANAGGTTCGNNNCAANGCCTATTGTTTCCTT
GGTGGTTNTTTAAAACTTATGAAGANNNCCCTCCATGGGCCCNNNNNNNN
TNNNCTATTTTTGGAGGCCCTTTNNNCCCCNNCTTTATTGCGAA
TGAAGTGGGAGGCCTGGNGGNCGCCTGTTTCACAAATTTAGGTGAACTAT
AGAAGTTTCAGAGAAATTCAACCCCTCTCCAGTAGAAGACCACACATCAG
AGGACACTTGGGCAGACAAAACAAAAACAAAAACTGGTCTTGAAGATAAA
TAATATGGATACAGGGAGACATAGCACTTAATTAATTCAATGTTGGCCTT
GTGTCCAAGGAAAAATATCAGTATGCTTAAAAGATATCTGTATTGAGCAT
CAGCACATTGGAATATCATTTCAAGTGGTTTGGGTATGGAAACATCCTGA
GTGTTATGGTAGAATGTCNTCCAATGGAATATTACCTATCCATAGCCATT
TGAAAGAAAGAATACTTGCTATTTCAATGTAATGAATACTGAAGCCATTA
AGATGTGAAAAATAAGATGGAAAAAGGCAAATCCTGCATAATCTGATTTA
TTAATGTAATAATAATAATAACCAAATGTATTATAACAGAGAATATAATG
GTGGTTACCAGAGGCTATGGGAGATATAAATAAAAGGAGATATATTTTTT
GAATATCACAAATTCCTAAATATAATCATAAGATGCCCTTAATGTACAGA
CACCCTAAACCTTCTCCGTAACTCATTACATAAATGAACTTTACACCATC
CTCCAAAATTTCTTTTATTGGTCCCTGTGAGGCCCCCCTGTCCTCCTTTT
TTCATTTAGCCCCCTATTCCTAACTTTTTATTTTTTGGGATCTCGGACGA
AATTTTTTAACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_c11.g1 MSMg01no459_c11.g1 CHROMAT_FILE:
MSMg01no459_c11.g1 PHD_FILE: MSMg01no459_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:57 2005
         (483 letters)



>mm_chr10_64720767_64721648
          Length = 882

 Score =  576 bits (298), Expect = e-169
 Identities = 324/334 (97%), Gaps = 5/334 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaacccctctccagtagaagaccacacatcagaggacacttgggcagacaaaacaaaaa 60
           |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 331 tcaa-ccctctccagttgaagaccacacatcagaggacacttgggcagaaaaaacaaaaa 273

                                                                       
Query: 61  caaaaactggtcttgaagataaataatatggatacagggagacatagcacttaattaatt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 272 caaaaactggtcttgaagataaataatatggatacagggagccatagcacttaattaatt 213

                                                                       
Query: 121 caatgttggccttgtgtccaaggaaaaatatcagtatgcttaaaagatatctgtattgag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 caatgttggccttatgtccaaggaaaaatatcagtatgcttaaaagatatctgtattgag 153

                                                                       
Query: 181 catcagcacattggaatatcatttcaagtggtttgggtatggaaacatcctgagtgttat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 152 catcagcacattggaatatcatttcgagtggtttgggtatggaaacatcctgagtgttat 93

                                                                       
Query: 241 ggtagaatg--tcntccaatggaatattacctatccatagccatttgaaagaaagaatac 298
           |||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ggtagaatgactc--ccaatggaatattacctatccatagccatttgaaagaaagaatac 35

                                             
Query: 299 ttgctatttcaatgtaatgaatactgaagccatt 332
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  ttgctatttcaatgtaatgaatactgaagccatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space:   412456
Effective search space used:   412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)