BAC Information

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BAC

Clone NameMSMg01-459F09
Chromosome10 (Build37)
Map Location 25,798,370 - 25,798,605
singlet/doubletsinglet
Overlap geneC030003D03Rik, LOC100040851
Upstream geneAkap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697
Downstream geneLOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F09.T7 (MSMg01no459_f09.b1)MSMg01-459F09.TJ (MSMg01no459_f09.g1)
ACCAG544955AG544956
length791774
length of high quality
(start - end)
452 (44 - 495)236 (75 - 310)
definitionCHROMAT_FILE: MSMg01no459_f09.b1 PHD_FILE: MSMg01no459_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:13 2005CHROMAT_FILE: MSMg01no459_f09.g1 PHD_FILE: MSMg01no459_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGAAAGAGGATCCGCG
GAATTCATGGCTTACTTTTAAGTATATTATTTTAACCATTTAAAAAAGGA
GTACAAACACGAGAACTTCTAAAATTTACTTTAAGATTTCTAAATACAGT
TTTCAAAGCAGTTATGTCTCCTTGGAGAAATTGACTGATGGCTTGACCTG
TGGCAACAAATGGATGAAGTGCATCTGAGGTGTGTTATTATTTCAAAAAT
TGAAGGAGTTATTACAAGTCATTGTTGTCATGGCTCAAAGACTCAAGAGC
AAATTTGAAATGGATACCATTATTCAGAGATGGTGCAAATTAAGCATTAA
TATAGATAATAGTTATAATGGATTAGAATACATAAAACTCAACCATGGGA
TCTGTACTGACTGGTTTTGTTTATCAACTTGACACAAGTTAGAGTCATCA
AAGAGGAAGGAGCCTCAGTTGAGGAAATATCTCCATGAGATCCAGTTGTA
GGGCCATGCAATTAGTGATCAATAGGGGATGGGCCAGCCCATGAGGTATG
GTATCATCCCCGGTGGGCCTGGATTCTATTAGAAATCACACTGAACAACC
CTTGGAAAGCAAAGCACTTAACAGGAACCTCTCCATCACTTTCTGTATTA
ACCTCCTGCCCTCCAAGTTCTTGAACTGTTTGAAATCCCGTGTCCAACTT
TCCTCCCGGGGGGAAACACAATGTCTAATCGCAAGTTGTAATAAAAACTT
TCCTTCCCCATTTTAATATTTTGGTCAACAAAACCTTCGTG
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCCGAAGCCGCCAAGAGGAGGATCG
GGGGCGAGGGCGGGACGGGCTTCCCGGAGCGTCGCCAGCAGCCGGGGACC
CAGACGGTGCTAATCGCACCGTCGCCCACGACCCGTGGGAACTCCGCCGG
CCCAGTCGCCAAGCTGTGCAAGAGCTGCGTGCAGGACCCGCCCTTCCCCC
CGGACCCCAACCCAGCTACCCGGCGCCCTGGCTGCAAAGTTGTACTTCTA
GCGCCGGGATGTGTTTTTTTACAAAACCCATTTGGGGAACAAAGTACCGC
TTCCAGGCGATCTGCTTCATCTGAAGGCCAGCGGGCGGAAGCGGACACAC
CCACTCGCTTCTCATCACCGTCGGACGCGAGTTCCAGAACGGGAGATCCC
TGCCCCTCCTGTCCCAATAAGAACTGGGGATCCCCAGCGGACTCTGTATT
TTCTGGAAGAAGGATCCTAGGCCCCTCGGTTCCCGCCCCTCGGATGCTTT
CTTATCCGAGGCACTCTGTGAGGGTCGGGGTCCCCCTGGGGGCTTTCTCA
AAGTTGGTTCCAACAAGTTTTTTTTTATCCCTCCTTTAAAATTTTCTTTT
TTTTTTTTTAGCGGGTTATTTTTCTTTGCAGCTCCTTTCTTTAATTAATT
ATTTTTGTTTTATTTTTTTTCCCTTTCTCTTCTTCCTTTCTTTGTTTCCT
CCTCTTTTCCCTCTTTTTCATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f09.g1 MSMg01no459_f09.g1 CHROMAT_FILE:
MSMg01no459_f09.g1 PHD_FILE: MSMg01no459_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:14 2005
         (236 letters)



>mm_chr10_25798170_25798805
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccgaagccgccaagaggaggatcgggggcgagggcgggacgggcttcccggagcgtcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccgaagccgccaagaggaggatcgggggcgagggcgggacgggcttcccggagcgtcg 260

                                                                       
Query: 61  ccagcagccggggacccagacggtgctaatcgcaccgtcgcccacgacccgtgggaactc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ccagcagccggggacccagacggtgctaatcgcaccgccgcccacgacccgtgggaactc 320

                                                                       
Query: 121 cgccggcccagtcgccaagctgtgcaagagctgcgtgcaggacccgcccttccccccgga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 cgccggcccagtcgccaagctgtgcaagagctgcgtgcaggacccacccttccccccgga 380

                                                                   
Query: 181 ccccaacccagctacccggcgccctggctgcaaagttgtacttctagcgccgggat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccaacccagctacccggcgccctggctgcaaagttgtacttctagcgccgggat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)