BAC Information

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BAC

Clone NameMSMg01-460C12
Chromosome10 (Build37)
Map Location 103,486,262 - 103,486,810
singlet/doubletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C12.T7 (MSMg01no460_c12.b1)MSMg01-460C12.TJ (MSMg01no460_c12.g1)
ACCAG545580AG545581
length706712
length of high quality
(start - end)
612 (59 - 670)549 (70 - 618)
definitionCHROMAT_FILE: MSMg01no460_c12.b1 PHD_FILE: MSMg01no460_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:19 2005CHROMAT_FILE: MSMg01no460_c12.g1 PHD_FILE: MSMg01no460_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
CTATGCCAGTCTTTTGACCTCTACCTGTCTGCTGTAGAAACACCACACCA
AACACATCAGAAAGAATTTGAATAGAATATAAAATATAACCAGTTTGTCC
AGGTCTACATAGGGATATTTGTCACAAACAAAATACACTAAAATAAAAAC
AAATGCTTTTAATCCCAGCCCTCAAGACGCAGAGGCAGGAGGATCTTTCC
AACTTCCATGATAGCCTGGTAGACACAGCCAGCTCTAAACTGTCCAGGGC
TGCCTTGTAAATTCTGGACTTCAGAGATAAATGATGCTATCTCTATATTT
TACCAGAAGTTAAAAAATTTTAACAAACATAATTAGAATAAAACGACCAC
CCAATTTCAAAAACTGGATTATGTAAAATCAAATGTATTTAGAGTTGAAT
TTTATGTTTATGTCTTGGGAAAGAACTATTTCATAGCTCTGAAGACCTGG
AACTCTCTTAGGAGACATTAGGCTCCTTGAGACTAGTTGGTGTGGTTCAC
TCACCTCTTGGTCAAGCCTTCTTTCTCAGGGCAGACTGCTCTCTTTGTAG
CTTGCCTCAGCTCTCTCAAGAGTGCTGCCCAAGCCCCTCCAGACTCCTTT
TATAAGGACCTCCCCCTCTCTAAATAAGCCTAACATCTATGATAATTGAA
TCTGTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTACATTATGAAAAACCATGTTAGCAACAA
CAGCAGAAGGACATTTTTAATTTTTATTTTCCTAGTTAAGAAATTCATAG
TCTTTTAAAAGTAAGTTATGGAAATTCTACAGGTGTACCTAATTAACTGT
CTCCTTGTTGCTTTTATTAAATCTGCATGTGGGAAAGCTTTTCTCCAAGG
AATATTGGTGTACACAATAGCTCTTAGTGGCTCCTTCAATCACGGAAGGA
GTAGAGATGTGGTTGAGCATGCAGTAACATAGGGACAAGATATCCTGGAA
TGATACAATAAAGGTCCACATTCCTAGAGGACATATTAATTAGCAGAACA
CCCTTTTGTTTGCTTATTAATCATTTTTTCTGAAGGATTTAAGATTGGAA
CCCTAAGAATAAAACCATTTCTTAATTCTTTAAGGAAGTCTTCAAGAACT
TTTCTTGAGGGCTTCAAAGTGGAGGAATTGTTCAGGCAGACAGTTTGGAC
AATTTTTAAATTCAGTGAAAGATGCAATGAGACATGTCTAAAGAAAACTT
TCAGTTTTCCTTATCTCTTAAATAGTGTTAGTTCACACTTGTGTATTAAC
AAAAACAAAAACCAAAACAAAAACGAGTGTGACATTTGAAGTTAGGATTA
TTTTGTCTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c12.g1 MSMg01no460_c12.g1 CHROMAT_FILE:
MSMg01no460_c12.g1 PHD_FILE: MSMg01no460_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:19 2005
         (549 letters)



>mm_chr10_103486062_103487010
          Length = 949

 Score =  924 bits (478), Expect = 0.0
 Identities = 532/550 (96%), Gaps = 2/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacattatgaaaaaccatgttagcaacaacagcagaaggacatttttaatttttattt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacattatgaaaaaccatgctagcaacaacagcagaaggacatttttaatttttattt 260

                                                                       
Query: 61  tcctagttaagaaattcatagtcttttaaaagtaagttatggaaattctacaggtgtacc 120
           ||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 261 tccttcttaagaaattcatagtcttttaaaaataagttatggatattctacaggtctacc 320

                                                                       
Query: 121 taattaactgtctccttgttgcttttattaaatctgcatgtgggaaagcttttctccaag 180
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattaaatgtctccttgtagcttttattaaatctgcatgtgggaaagcttttctccaag 380

                                                                       
Query: 181 gaatattggtgtacacaatagctcttagtggctccttcaatcacggaaggagtagagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatattggtgtacacaatagctcttagtggctccttcaatcacggaaggagtagagatg 440

                                                                       
Query: 241 tggttgagcatgcagtaacatagggacaagatatcctggaatgatacaataaaggtccac 300
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttgaggatgcagtaacataaggacaagatatcctggaatgatacaataaaggtccac 500

                                                                       
Query: 301 attcctagaggacatattaattagcagaacacccttttgtttgcttattaatcatttttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 attcctagaggacatattaattagcagaacacccttttgtttgcttattaatcaattttt 560

                                                                       
Query: 361 ctgaaggatttaagattgga-accctaagaataaaaccatttcttaattctttaaggaag 419
           |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ctgagggatttaagattg-acaccctaagaataaaaccatttcttaattctttaagaaag 619

                                                                       
Query: 420 tcttcaagaacttttcttgagggcttcaaagtggaggaattgttcaggcagacagtttgg 479
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 tcttaaagaacttttcttgagggcttcaaagtggaggaattgttcaggtagacagtttgg 679

                                                                       
Query: 480 acaatttttaaattcagtgaaagatgcaatgagacatgtctaaagaaaactttcagtttt 539
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acaatttttaaattcaatgaaagatgcaatgagacatgtctaaagaaaactttcagtttt 739

                     
Query: 540 ccttatctct 549
           ||||||||||
Sbjct: 740 ccttatctct 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)