BAC Information

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BAC

Clone NameMSMg01-460O04
Chromosome10 (Build37)
Map Location 40,974,865 - 40,975,434
singlet/doubletsinglet
Overlap geneA530089I17Rik
Upstream gene2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
Downstream geneLOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460O04.T7 (MSMg01no460_o04.b1)MSMg01-460O04.TJ (MSMg01no460_o04.g1)
ACCAG546137AG546138
length736734
length of high quality
(start - end)
491 (57 - 547)570 (66 - 635)
definitionCHROMAT_FILE: MSMg01no460_o04.b1 PHD_FILE: MSMg01no460_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:16 2005CHROMAT_FILE: MSMg01no460_o04.g1 PHD_FILE: MSMg01no460_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGAGGCCGCTAAACGACTCACTTTCCAGAGAGGATCCGCGGAATTCCTGA
TTTTCCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTT
TTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTT
ATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCAT
TCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTT
CTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTC
ATATTATTTATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGG
TTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTAC
TTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCT
TCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCT
TTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATA
TGGGACTGTTTATAAGGTCAATTTGAACCTGAATCCACTTTGTTAACTGG
AATCTGGCCAGAAATTTGTTCATTTTTTTCAGGTTTTCCAGTCTCTGGTG
AATATAATCTTTTGGAAAAACAAATTCATGGATCTTTTTGAAGTTCTCTC
AACCCACTGTTGTACTATCCCCCCCTTTTCCTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTGTTTACTATTTAGTAGACCAGGGAAGTCCTTC
TGGCTGACAGTGGATACTTTCATGAAAGTAGAGTCTGGCAGCCTGCCATA
GTGATTGCTCGCAGCTTGTTTGCTGGTGGCTCCCGAAAAGGATGCATTCC
TTATTTATATGTAAAGGAACCAATACCATGTATTTCCAGCATTTGATTCT
CAACATAGTTAACTATGGTGGTGGGATGAGGAAACCCGAATCAAACACTG
TCCATGTTTGCAAGAAGCCTTCTGCTATCGTTTGCAGGGTTTGCATTTCA
GGGAATCTTAAGGTACAGGGAGAAGACAAAACTGTGGAAGGCTTTACTAG
GGAGGCGCCTGCAGTTGTGCAGGTTACAGAGACTGGAGAAAGATAGGGGC
TTGAAGGAAAGCCAAGGCACTCTGGTAGAACACAGAGAGGGTGCCCAAGA
GGGACATGGGCACCTTGCGATGCCTCCATCCCAAGCTTTCTTTGAGTGTG
GTGACTGCCTGTCTCAGTTATTCCCATCTAACAGAGCAAGAGAGCAGAAG
TATCTGATGNCAGACATCTTCCCTTCTATTGCTGTAGCTCTTAGAATCTA
CAGATATATATTATGCAATTCCCGCCCCTTTAAAAATAGAAAAAAGGGGT
TGGGGTGGTGGCTTAATCTTTAGTGCAAGCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_o04.g1 MSMg01no460_o04.g1 CHROMAT_FILE:
MSMg01no460_o04.g1 PHD_FILE: MSMg01no460_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:17 2005
         (570 letters)



>mm_chr10_40974665_40975634
          Length = 970

 Score = 1042 bits (539), Expect = 0.0
 Identities = 562/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtttactatttagtagaccagggaagtccttctggctgacagtggatactttcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 attgtttactatttagtagaccagggaagtccttctggctgacagtggatactttcatga 711

                                                                       
Query: 61  aagtagagtctggcagcctgccatagtgattgctcgcagcttgtttgctggtggctcccg 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 710 aagtagagtctggcagcctgtcatagtgattgctcgcagcttgtttgctggtagcttccg 651

                                                                       
Query: 121 aaaaggatgcattccttatttatatgtaaaggaaccaataccatgtatttccagcatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaaaggatgcattccttatttatatgtaaaggaaccaataccatgtatttccagcatttg 591

                                                                       
Query: 181 attctcaacatagttaactatggtggtgggatgaggaaacccgaatcaaacactgtccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 590 attctcaacatagttaactatggtggtgggatgaggaaacccgaatcaaacactgtctac 531

                                                                       
Query: 241 gtttgcaagaagccttctgctatcgtttgcagggtttgcatttcagggaatcttaaggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gtttgcaagaagccttctgctatcgtttgcagggtttgcatttcagggaatcttaaggta 471

                                                                       
Query: 301 cagggagaagacaaaactgtggaaggctttactagggaggcgcctgcagttgtgcaggtt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 catggagaagacaaaactgtggaaggctttactagggaggcgcctgcagttgtgcaggtt 411

                                                                       
Query: 361 acagagactggagaaagataggggcttgaaggaaagccaaggcactctggtagaacacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acagagactggagaaagataggggcttgaaggaaagccaaggcactctggtagaacacag 351

                                                                       
Query: 421 agagggtgcccaagagggacatgggcaccttgcgatgcctccatcccaagctttctttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agagggtgcccaagagggacatgggcaccttgcgatgcctccatcccaagctttctttga 291

                                                                       
Query: 481 gtgtggtgactgcctgtctcagttattcccatctaacagagcaagagagcagaagtatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 290 gtgtggtgactgcctgtctcagttattcccatctaacagagcaagagagcagaagtatcc 231

                                         
Query: 541 gatgncagacatcttcccttctattgctgt 570
           |||| |||||||||||||||||||||||||
Sbjct: 230 gatgtcagacatcttcccttctattgctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)