BAC Information

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BAC

Clone NameMSMg01-461B21
Chromosome10 (Build37)
Map Location 52,118,084 - 52,118,520
singlet/doubletsinglet
Overlap geneNepn
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294
Downstream geneD10Ertd438e, EG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461B21.T7 (MSMg01no461_b21.b1)MSMg01-461B21.TJ (MSMg01no461_b21.g1)
ACCAG546315AG546316
length806776
length of high quality
(start - end)		450 (40 - 489)437 (70 - 506)
definitionCHROMAT_FILE: MSMg01no461_b21.b1 PHD_FILE: MSMg01no461_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:35 2005CHROMAT_FILE: MSMg01no461_b21.g1 PHD_FILE: MSMg01no461_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGGCGCTATACGACTACTATTTTCCCAAATCCGCGGAATTCT
CACCTGTTCCCACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATAGTACTACCGGATTATCCCACAATACCTCTCCTGGGCATATATCC
AGAAGATGCCCCAACTGGTTAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTATAAAGAATGAATTTATGAAAATCCTAGCCCAATGGATGG
ACCTGGAGGGCATCCTCCTGAGTGAGGGAACACATTTCCCCAAGAAACTC
CCCCCATATGGTACCCCCTGCAAAAGAAAATATTAACCCCCCACCCCTGG
ATACCCCAGAAAAATTAATATATTTTTCTAAACCCCTCGAAACTCCCAAA
AAAAATGAAAAACCGATTGTGGGTGACCTATTGCCCCCCCCCTTTAAAAT
GGGAAACAAATCATATCTCTTCTTCGTATGTTCCCTTAACAAAAAATTTT
GGTTTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTACATTCCATCCTTAAATGTATGTTACAGCC
ATAAGGTTCATAGAAATATATACTTGAGTGGGAAACATGTGCTGGTTACT
GTTTTACTTGCTGGCAACCTATGGTGGGGCAGGCAATTTTATTTTATTAT
TTTATTTTACTCATTTGTTTATTTTGAGACAGGGTTTCTCTATGTAGCTC
TGGCTGTCCTAGAACTCACTTTGTTGACCAGGCTGGCCTCAAAATGCACA
GAGATCCACCTGCCTCTGCCTTCCTAGTGCTGGGATTAAAGACATACATC
ACCGTCACCTGGAAATTTCAACTTCTTAAGCCTTGGCTTTCCTCACTGAA
GGGTCAGTAATCATTCTTTGTAGAAAAAAATTAAGCAGCAAATTTTTAGA
AAATTGTGACTATTTTAATTGACAGACATCAAAACCAATCCCTGCTGACT
CTGGCAAAGAGAGTAAGAAAATATTTTCCATGCTTAATAGAAATATTAAG
ATTCTAGCTACTAGATTCAGCTAGGACCAGGCAGAATCCCTCTGTTTTGT
ATGCCCCCCCCTGCCCTTCCCTATGTTGAAATGGAAAATAATTGTAACCC
TGAAAAGGGGTTTTGTCTCCTCCCCCCAAGAAACACCCTTTCGGGGAGCT
TGGCTTTCTCTTTTAACAAGACTTTTTTTACTTTTTTCCGCTTTGTTGGC
CTTCCTTCCCACATGTATATTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_b21.g1 MSMg01no461_b21.g1 CHROMAT_FILE:
MSMg01no461_b21.g1 PHD_FILE: MSMg01no461_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:35 2005
         (437 letters)



>mm_chr10_52117884_52118720
          Length = 837

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacattccatccttaaatgtatgttacagccataaggttcatagaaatatatacttgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacattccatccttaaatgtatgttacagccataaggttcatagaaatatatacttgagt 260

                                                                       
Query: 61  gggaaacatgtgctggttactgttttacttgctggcaacctatggtggggcaggcaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaacatgtgctggttactgttttacttgctggcaacctatggtggggcaggcaattt 320

                                                                       
Query: 121 tattttattattttattttactcatttgtttattttgagacagggtttctctatgtagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttattattttattttactcatttgtttattttgagacagggtttctctatgtagct 380

                                                                       
Query: 181 ctggctgtcctagaactcactttgttgaccaggctggcctcaaaatgcacagagatccac 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ctggctgtcctagaactcactttgttaaccaggctggcctcaaaatgcacagagatccac 440

                                                                       
Query: 241 ctgcctctgccttcctagtgctgggattaaagacatacatcaccgtcacctggaaatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctctgccttcctagtgctgggattaaagacatacatcaccgtcacctggaaatttc 500

                                                                       
Query: 301 aacttcttaagccttggctttcctcactgaagggtcagtaatcattctttgtagaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttcttaagccttggctttcctcactgaagggtcagtaatcattctttgtagaaaaaa 560

                                                                       
Query: 361 attaagcagcaaatttttagaaaattgtgactattttaattgacagacatcaaaaccaat 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 attaagcagcaaatttttagaaaattgtgactactttaattgacagacatcaaaaccaat 620

                            
Query: 421 ccctgctgactctggca 437
           |||||||||||||||||
Sbjct: 621 ccctgctgactctggca 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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