Query= MSMg01no461_k20.b1 MSMg01no461_k20.b1 CHROMAT_FILE:
MSMg01no461_k20.b1 PHD_FILE: MSMg01no461_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:22 2005
(473 letters)
>mm_chr10_121261817_121262689
Length = 873
Score = 810 bits (419), Expect = 0.0
Identities = 457/475 (96%), Gaps = 12/475 (2%)
Strand = Plus / Minus
Query: 4 gaattctttcgagtta---ctaactgtatgtctctcctcgtatgcaaaacatgttgaaaa 60
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaattctttcgag--agaggtaactgtatgtctctcctcgtatgcaaaacatgttgaaaa 615
Query: 61 gtcaccttcttctgtcttctgcccggcatgctctgcacagcccccaaacctccatcttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtcaccttcttctgtcttctgcccggcatgctctgcacagcccccaaacctccatcttgc 555
Query: 121 acgggccccgttgtgggagtcaggacatggttgttacaaattctgtgcaaagtagaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acgggccccgttgtgggagtcaggacatggttgttacaaattctgtgcaaagtagaaagt 495
Query: 181 cctatgaattcttgtcctccggtttaggatttacattagctgcccttgacagcctagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctatgaattcttgtcctccggtttaggatttacattagctgcccttgacagcctagatg 435
Query: 241 tacatcaagggggccctgacaggggtctagaatg---ttttatggccgttaagttacatt 297
|||||||||||||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 434 tacatcaagggggccctgacaggggtctagaatgggc----agggccattacgttacatt 379
Query: 298 ctggcctccgactcagcctcctggctgcgggaatctcttcacgtctctagacttagcaag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctggcctccgactcagcctcctggctgcgggaatctcttcacgtctctagacttagcaag 319
Query: 358 acaacctggagccttcatgtggtaaatgtatttaatttagcttgcttcagaactgaagtg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 318 acaacctggagccttcatgtggtaaatgtatttaatttagcttgcttcagaactgaaatg 259
Query: 418 taccttcctttaagtatagcttttcccactcgcagcctacatgatgagggaatgg 472
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 taccttcctttaagtatagcttttcccactcccagcctacatgatgagggaatgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_k20.g1 MSMg01no461_k20.g1 CHROMAT_FILE:
MSMg01no461_k20.g1 PHD_FILE: MSMg01no461_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:22 2005
(244 letters)
>mm_chr10_121117617_121118260
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Plus
Query: 1 aaatccccagaacgtatataaaacctgacatagttgtgcttgcttctaaccccagtactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatccccagaacgtatataaaacctgacatagttgtgcttgcttctaaccccagtactg 260
Query: 61 aggggtggggtggggcgggacagagacaggaaagttgttgtagcctgctgatggtcaacc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggtggggtggggcggggcagagacaggaaagttgttgtagcctgctgatggtcaacc 320
Query: 121 cagttcaaacttagtgagagaccatgtttgtgaagggaataaagacagaatggacacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttcaaacttagtgagagaccatgtttgtgaagggaataaagacagaatggacacaca 380
Query: 181 gccagagaagctggggcaggtggggctgcacttactctgatggagggcacctcctatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagagaagctggggcaggtggggctgcacttactctgatggagggcacctcctatgca 440
Query: 241 caac 244
||||
Sbjct: 441 caac 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
