BAC Information

Click to search

BAC

Clone NameMSMg01-461M05
Chromosome10 (Build37)
Map Location 8,876,049 - 8,876,427
singlet/doubletsinglet
Overlap genenone
Upstream geneUst, Sash1, LOC100039173
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M05.T7 (MSMg01no461_m05.b1)MSMg01-461M05.TJ (MSMg01no461_m05.g1)
ACCAG546810AG546811
length1,044738
length of high quality
(start - end)
---382 (77 - 458)
definitionCHROMAT_FILE: MSMg01no461_m05.b1 PHD_FILE: MSMg01no461_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:29 2005CHROMAT_FILE: MSMg01no461_m05.g1 PHD_FILE: MSMg01no461_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAACGAAACGAACGGGCCCTTTTTCTTGTCTTTCCCTCCCTTTCCCAA
AGGGCCAGCGAGAACTTGTTTTATAATGCCCCCTTGAACATTGGTGTATC
CCCATTCAAAATATATTGGGCCGTTAGGGCTCTACCTGGGTCTCTATACG
CACGGTACTTGCGGATCTCAATAGCGTTCGTCAATATAGAAAACCTTTAC
GGCTGGAGTCGACCCTACACCCGTTTTATTCGCCTTTTGCCCCATTTGCC
GGCATCCTTACGAGCGCTTATATTCTGTCAACGGGCCCTGTGGTTTGTCG
TCGCCGCTCTAGCGGCGATACACGCCCCTGGCTGAGGGCCCGTCCAGTAA
GATAAGCTTGGGGAGGGTAGTGGCCGGGTGTCATGGACGCGCGCTACGCG
TTCTTCGGTTCGACGCGCTCGCGATGATAGTATGCCTGCTGTTTAAACAA
TAAAAAAACCCGGCGTTGTTTATCGAATATATGATACTTCTGTTATACAC
AATTTCCCGGGGCACGAGTATTCGGCGGTCATGCTTGCGTACCGTTTTGC
ACACGTTTGTCAACTTCTTCCTTTATTTGTTATTCGTTTAATGCCTCGCG
TACCGCGGTATTTTTTGAACTCGTCTCTTCGGTTTTGTGTCTACGTTTCA
CCCGGCGCATTCGATCGCACTACGCTGATACGATATGCTCGCGATAATTC
CTGCCCCTTTACCTCTCCGTTATATTTATCCATATCCTCCCGCGTTGCGC
CCCCTATTCCTTACCCCCTCTTTTATCCTCGTTTCACCATCCGGCTTTGC
GCTTCCGTTATTACTCCGTTTTATAAATGCGCCTTCTCTAGAATATCCGC
TGTTCTTCATCGCGGCGTTCCTAATTTTATGCCCGCGCGGGTCTTCTTGT
TAATTTGCGCACGTGTTGTACCAATCTTGTCTGAGAAGTATTGGAACACG
GCGTCGCGATTTAAATGTTACTACGCGTAACATGTTTTGCCTACGCACCC
ATCGGTAGTCAGTGTGATTCGGTGATTAACGCAGCTTTACGCCC
CTCGATGTTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATCGCACGTACCACCTAGGTAG
AAGATTCCATCATCTGTAACTCCAGTTTTACCTTAAGACCATAAAGTTCA
AGACTAACTTGATTCCCACGGGTTAAATAAAGGTCTCGACAATCAGTTTA
CAGCTCTGGCTCCGACTTCCAGGAGATTTCAGGCTTGTTTTATTTCAGTT
CTTGTTTTCGGACAATGTTTGTTTAAATTGTATAGTTTATCATTGCAGTA
TTGCCAAAACAAAAACTATTTTTTTCTTTCTTTTCATATTTCTTTCTATG
AGTTGTCTTAAGAGCCATACAATCATTTTCAAGTTGATGCTTATTTAGCT
GGGTCATCATATTAAAATAATCACAACTTTCAGAAATTTGCTCCTGAACT
TATTTTGTGGTATTAGATCCTAGATGTATGTGAATATGAATTCTATAACA
ACTGGAGATAATATTTTATTCTTTTAGTTCCAATGACTGTAAAAGAAGGA
TTTATTTTATAAATTATGTGCTTTTGCTTGTGTGTATGCATGTGCCCCAC
CTGTGTGCTCATGGATCCTTATAATACGTCTTGTCATCGCCTTACAATAT
GATTCTGTTTATGGTTGTGTATTCTCCTCATGTTCCTTGCCGCCCCATTT
TTTTCCTGTTTCTCCTCGTTTTACCCCTCTTTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m05.g1 MSMg01no461_m05.g1 CHROMAT_FILE:
MSMg01no461_m05.g1 PHD_FILE: MSMg01no461_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:29 2005
         (382 letters)



>mm_chr10_8875849_8876629
          Length = 781

 Score =  630 bits (326), Expect = 0.0
 Identities = 366/384 (95%), Gaps = 9/384 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcgcacgtaccacctaggtagaagattccatcatctgtaactccagttttaccttaa 60
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatcggacgtaccacctaggcagaagattccatcatctgtaactccagttttaccttaa 260

                                                                       
Query: 61  gaccataaagttcaagactaacttgattcccacgggttaaataaaggtctcgacaatcag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 261 gaccataaagttcaagactaacttgattcccacaggttaaataaaggtctcgataatcag 320

                                                                       
Query: 121 tttacagctctggctccgacttccaggagatttcaggcttgttttatttcagttcttgtt 180
           ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttacagctctggctcccacttctaggagatttcagacttgttttatttcagttcttgtt 380

                                                                       
Query: 181 ttcggacaatgtttgtttaaattgtatagtttatcattgcagtattgccaaaacaaaaac 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggacaatgtttgtttaaattgtatagtttatcattgcagtattgccaaaacaaaaac 440

                                                                       
Query: 241 ta----tttttttctttcttttcatatttctttctatgagttgtcttaagagccatacaa 296
           ||    ||     |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 taggaatt-----ctttcttttcatatttctttctatgagttgtcttaagatccatacaa 495

                                                                       
Query: 297 tcattttcaagttgatgcttatttagctgggtcatcatattaaaataatcacaactttca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcattttcaagttgatgcttatttagctgggtcatcatattaaaataatcacaactttca 555

                                   
Query: 357 gaaatttgctcctgaacttatttt 380
           ||||||||||||||||||||||||
Sbjct: 556 gaaatttgctcctgaacttatttt 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 781
Length adjustment: 9
Effective length of query: 373
Effective length of database: 772
Effective search space:   287956
Effective search space used:   287956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)