BAC Information

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BAC

Clone NameMSMg01-461P06
Chromosome10 (Build37)
Map Location 49,813,741 - 49,814,206
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P06.T7 (MSMg01no461_p06.b1)MSMg01-461P06.TJ (MSMg01no461_p06.g1)
ACCAG546954AG546955
length767746
length of high quality
(start - end)
352 (51 - 402)465 (79 - 543)
definitionCHROMAT_FILE: MSMg01no461_p06.b1 PHD_FILE: MSMg01no461_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:45 2005CHROMAT_FILE: MSMg01no461_p06.g1 PHD_FILE: MSMg01no461_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACATCTATXXXXXXXXXXXXXXXXXXXXXXXCTAAATCAAGAGGACCG
CGGAATTCCTGATCTTTCAAAACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAATGGATTCCATTGATGGATTTTCATATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGCTCAGGATGGATGATTGC
TTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTG
CATCGATATTCATAAGATTTTTTGTTCTGAAGTTCTCTATCTCTGTTGGG
TCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTT
GGGTATAGTACCTTCTACCTCTATTTTGCGAAATAGTTTGCGCATAATTA
TAATTAGATCTTCTTTGAAGGTCTGATAGTATTCTGCACTAAACCCATCT
GGTTCTGTGCTTTTTCTTGGTTCGTAGTACTATAATAACTTGTTCCCATT
TTTTTTACTTGATTTGGCCCTGGCTTTTATTTACTTCCCTATTCCTGAAT
AAATTTTGTTTACATGGTATCTTCTCCTAAACTTCCATTTCATTTTTTTT
TCGTGTTTTCCTCTTTTCGTATCCTCTTTTAAACTTTTCCACTCCTCTCC
TTCCTTTTATTCATTATTTACATTATCTTTCTTTACCTTTTCCTCTCCTC
TCTTCTTATTTTATTTN
TCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAAGCAAACTCAAAGCAC
AAGACTACCCACATTCATAAGAGCCTGAGTAGATGGAAATGTAACGTGGC
AAAGGGAACACTTCACAGAGCAAGAAACTGAGCTCGAAATACATGGAGTT
TTATTCAACGTGTTCTTGAAAATTCATAAAATGAAATTCTCCAGAAAAGA
GCTTAGTTTGTATAAAGAGCTAAAAATGATCAAGTAGACGCTTCAGCTTA
GTGCAGGACAATTATTTTTTTAGACAGTTCTCCAGAACCAATTGCTTAGA
ACTTCATCAGATTGATTCTTATACTTCAACTTGCTTGCTTTAAGATGACA
GTATGTATAAAACAGCAAAGAATGGAAAAATTAGAATAGAAAATTAAGAG
GAAAAATTAAGTCTAAAAAACAGGCAGTTAATTTTTTAATACATGCTTTA
AAATGCTATCCACTTGCTGGACAAGGATCATAAATTTCAATTTCCTTGCA
TCCAGCCAAGTACAGACAGCAGCATTAGTTACTTAACTTGCCTGCCCTAT
AATATAAACTTGCCGCTAGGAAGAAACACAAATAAATACTTGCTCGTGAC
TCCCTATTGGGGATTTATCCCTAAGTTCCTTTTATAAAAAAAATTGTATC
TTGTGTGACTACACCCCCTCTTCTGTTGCTCCGGAATTATATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p06.g1 MSMg01no461_p06.g1 CHROMAT_FILE:
MSMg01no461_p06.g1 PHD_FILE: MSMg01no461_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:45 2005
         (465 letters)



>mm_chr10_49813541_49814406
          Length = 866

 Score =  832 bits (430), Expect = 0.0
 Identities = 457/466 (98%), Gaps = 1/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgaagcaaactcaaagcacaagactacccacattcataagagcctgagtagatggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgaagcaaactcaaagcacaagactacccacattcataagagcctgagtagatggaa 260

                                                                       
Query: 61  atgtaacgtggcaaagggaacacttcacagagcaagaaactgagctcgaaatacatggag 120
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaacatagcaaagggaacacttcacagagcaagaaactgagctcgaaatacatggag 320

                                                                       
Query: 121 ttttattcaacgtgttcttgaaaattcataaaatgaaattctccagaaaagagcttagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ttttattcaacgtgttcttgaaaattcataaaatgaaattctccagaaaagagcttagta 380

                                                                       
Query: 181 tgtataaagagctaaaaatgatcaagtagacgcttcagcttagtgcaggacaattatttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgtataaagagctaaaaatgatcaagtagacgcttcagcttagtgcagaacaattatttt 440

                                                                       
Query: 241 tttagacagttctccagaaccaattgcttagaacttcatcagattgattcttatacttca 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tttagacagttctccagaaccaattgcttagagcttcatcagattgattcttatacttca 500

                                                                       
Query: 301 acttgcttgctttaagatgacagtatgtataaaacagcaaagaatggaaaaattagaata 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgcttgctttaaggtgacagtatgtataaaacagcaaagaatggaaaaattagaata 560

                                                                       
Query: 361 gaaaattaagaggaaaaattaagtctaaaaaacaggcagttaatttttt-aatacatgct 419
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 561 gaaaattaagaggaaaaattaagtctaaaaaacaggtagttaatttttttaatacatgct 620

                                                         
Query: 420 ttaaaatgctatccacttgctggacaaggatcataaatttcaattt 465
           |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ttaaaatgctatccacttgctggataaggatcataaatttcaattt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space:   389480
Effective search space used:   389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)