BAC Information

Click to search

BAC

Clone NameMSMg01-461P23
Chromosome10 (Build37)
Map Location 92,038,952 - 92,039,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203, LOC216229
Downstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P23.T7 (MSMg01no461_p23.b1)MSMg01-461P23.TJ (MSMg01no461_p23.g1)
ACCAG546988AG546989
length1,305767
length of high quality
(start - end)
---303 (155 - 457)
definitionCHROMAT_FILE: MSMg01no461_p23.b1 PHD_FILE: MSMg01no461_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:49 2005CHROMAT_FILE: MSMg01no461_p23.g1 PHD_FILE: MSMg01no461_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCGCAGCCAGTCCGCGGCGGTGCAGGAANGAGGTAGTTAGTTGATGA
CAGACACCAGAGAGGGGNTGNGNNNGNNGGGGTNGGTGATCANACAAAAC
ACAAGGGACGAGNAGTGAGANAACAAACTAAACACGCTGACAATCGAATC
ACCCAGCGCGACCGTGTGTTTCTCACCACCATCTACGAATATTACGCATA
CAGCGAATAAGGCGGCGTCGCAGGTGCACCGCGCCTACCGCCCGTTGTAG
GAGAGCGAGTAGCGAGGAGCACAGAACTACCGAGAAGATAGGCGGCAGCA
GTATACATGTCATGTGGCGCGGTGGACACACAAGATCGTAAGATTAAGAG
ACGCTGTCGTACCGACGAGCTGCATCACCGGCTATATTACAAGACACTGA
GATTATTTGCGAGAGCACGCATGAGAGTATGCCCACAGTACTACGTGAGC
TACGTATACGAGAATCCCACCCCGCGGGCGCTATAAGCCAGGTCGTTTGT
TATTCTCGCCATCGCGATACACGACCCCGACACGAGTTAATTATCTACCA
CAGCGAGATCCCTCTATTCTCGGCACAATGTTAGCCACCCTAGCCGAGCC
ACGGCGATCCATGTACTAACGCACCTACCAATGGTGTCCCGCCCTATTTG
TCCACCCAATTACTCACTCACCACCCCGTGATATAAGCACCTTCCAAGTG
TTATCCGCGTACTGACATCAAGGACATCTCTGATTACCGCCCATATATAC
ACGCAATGACCCACAAGAGAGTGGTGGGTATACANTGACTACCAATGACC
GATAGGAAGTGCACTTACGAAGAGATATCATTATCGAGATTCGATTACTC
AGCCACTACTATTCAACATGAGGGACGAATTAATTCAGTTCCACTCGATC
GGAGCGCTCTGATGTCGCATAACAACGCACAGTATTCGATCAGAACTCCA
ACACACCAGCCTAGAGAGATTGTACGCAGCATCGTGCCGTTCAACAATCT
CACTCGCACCCNCGATCGAAAATCATTCACACCCACACCGTCTGTCTCGT
CGTGCGCCACGAGAGTACACACATAATACATTAGCAATGCACGCCGCGCG
CACACCTAATTGTGTTCAGATATCAGTGCGACTCTCGCATGTGAGAACAC
GGTCANTGACAGATATCGCTCCATTCTACTACACGAGCGAGGTACTACTC
GTCACAGAGATAGATAGAAGTACTATAACGCCTGACCGTGCTGCTATGAA
TATACACATGCATGCTACAACCCTATATCACACCGATACGCATCTCTCTG
TTATT
NCAATGCAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATTCATGTAAACACATGCTG
GAGTACAAGGCTGTGCTGCTTAAACGGGCCATTCAAGCTTCTGACGTCGC
TGCTGTGAGCAGGCAGGATCGGTAAAGAAAGCCCTAAGGCATTATGGGAT
GGAACCACATTTATGGCAAAGCCTTCAAGGAAAAGCATAAATAAAGCCCT
AAGGCATATGGGATGGAACGACATTTATGGCAAAGCTTCAAGGAAAAGCG
TAGTGAACGTGAATCTCCAGTGAGGAACTCTGCTCATCTGGATTTTTTAA
AGCAACGCTGGTGATTATGATATGCAGCCAAGCTTGAAATCTGCTGAATT
GCACTAACACAAAAAAGATTAAACACTCCTACGTCTAAAATGCCAGGATG
GTTAGACCCAGAAGGCAGGTTTGCACATTACCTTTATTTTTCCCCTTTGA
GCTTGTTTAAATTTTCCACCTTAACCAAATCTTACTCACCGCGCAAGGAC
ACCACTTTTCCCTTTTTTTTTAAAACAAAAAGGGCTCCACCCCACAAAAC
GGGCACACATAAAAAAAAAAAACCAAACAACCTCAATTGCCCACTGTTAA
CCCCCATACAATTTCCATATCCTCCCACTTTTCCTCCCTCCCCAAACCCC
CATANCCCNTCCCCAATAATCCTACCACAACCCACCCTTTGCGGTGTTTT
GTCTTTTTTTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p23.g1 MSMg01no461_p23.g1 CHROMAT_FILE:
MSMg01no461_p23.g1 PHD_FILE: MSMg01no461_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:49 2005
         (303 letters)



>mm_chr10_92038752_92039454
          Length = 703

 Score =  555 bits (287), Expect = e-162
 Identities = 299/303 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaggcaggatcggtaaagaaagccctaaggcattatgggatggaaccacatttat 60
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagcagggaggataggtaaagaaagccctaaggcattatgggatggaaccacatttat 260

                                                                       
Query: 61  ggcaaagccttcaaggaaaagcataaataaagccctaaggcatatgggatggaacgacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaagccttcaaggaaaagcataaataaagccctaaggcatatgggatggaacgacat 320

                                                                       
Query: 121 ttatggcaaagcttcaaggaaaagcgtagtgaacgtgaatctccagtgaggaactctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatggcaaagcttcaaggaaaagcgtagtgaacgtgaatctccagtgaggaactctgct 380

                                                                       
Query: 181 catctggattttttaaagcaacgctggtgattatgatatgcagccaagcttgaaatctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctggattttttaaagcaacgctggtgattatgatatgcagccaagcttgaaatctgc 440

                                                                       
Query: 241 tgaattgcactaacacaaaaaagattaaacactcctacgtctaaaatgccaggatggtta 300
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 441 tgaattgcactaacacaaaaaagattaaatactcctacgtctaagatgccaggatggtta 500

              
Query: 301 gac 303
           |||
Sbjct: 501 gac 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)