BAC Information

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BAC

Clone NameMSMg01-461P24
Chromosome10 (Build37)
Map Location 73,026,890 - 73,221,796
singlet/doubletdoublet
Overlap geneLOC623191
Upstream geneZwint, LOC432471, LOC544705, LOC100039981
Downstream genePcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P24.T7 (MSMg01no461_p24.b1)MSMg01-461P24.TJ (MSMg01no461_p24.g1)
ACCAG546990AG546991
length769756
length of high quality
(start - end)
392 (46 - 437)421 (76 - 496)
definitionCHROMAT_FILE: MSMg01no461_p24.b1 PHD_FILE: MSMg01no461_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:49 2005CHROMAT_FILE: MSMg01no461_p24.g1 PHD_FILE: MSMg01no461_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,221,490 - 73,221,796)(73,026,890 - 73,027,308)
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGGGTTTCTGAAGTATGGAGATATATAAGTAACAATGTTGAT
AATTCTGATATTAGTAAAAGACGAAGACGTAGTCTCAGAGAAAACTTCCT
GGTATAGGCGTAATGCTGTTGTGCCCTTTGTAAAGATTATCTTTGTGTTA
TTCAAATGCTGATTTCTGTGCTCCCATAACTGGTTGCAATTCCTGTTCTA
AGAATCTTCTGTCTCGTTATTGTGTAAACATTGCACCTCAACTCTTCTCT
GATTAGTCAAGATGGCTAGTTGTACAGCCAATGACTGAGCAGGGGAAATA
GTAGGGCTGGATTTCTTCCCAGCCAGGAGAGGGGACAAGGAAAGAGGGGA
AGTGGGAATTAATCAAAGGGAGAGAGTCCAGGAGAAAACACCTAGAGCCC
AGAAAGCCAGATCAGTATTGCTAGGATTTTAGCTGAGAAGTAGTTAGATT
AGTTTAGAGGATTAAGGAGAGTAATACTTCCTCAGTGTGGGGGCATTAAA
CCTTGTAAAAAAAATATATAATGCCGGGTCCCTTTTTTTGGGGCTTGCAG
GGTTATAAAAAAATTTGCAACCCCCTTTTTAAAAATCTTTTTCCAACCAG
GGGGGGGGGCCCCCCCTTTCATTGGTGGGGGGTTCCTAACAAGGCCCCCA
TCTTTTGATGGTTTTTTGGTAAAGAGGGGAGGAAAAAACCCCTTCTGTGT
TGTTGTGGAAAATTTTAAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAGGATTTTGTAGGGTGATGCCT
TGATCTTCATATGAGAAATTTGCAAATCAAACAGATTTGGCTATGGCTGA
AAATACGTTTTCAAATAATATTATTTTCCTAACTTTTAGCTAAAATTTGT
TCTCCGTAGTATTGTTTTAACAAAACGGAACATGTTTGCCAGCTTATACT
TTATTTCTGAGCTACTTTCCTTTTCTGCATGGTAAACTGCATATTCTATT
TTAATTCAGATGATATGCAGCAAGGCTGGTGTAGTTCTCTTTTTAAACAG
CAAGGGGCGCTCGTGTGTAAGCTTGCTGCCTGGTTCAGGAGTCCATGGCA
TCTAGACCTTAGCTATAGAATGCACAACTGACTTCCTACCTGGAAATGTG
TCTCCAAGAGAGAGAAGCTCCGCCTCCTGCGTTGCTACATATGGCGTCGT
GTTTTTTGTTTTTGTTCCCATTCCTCTTTTGATTTAAACCCCAGAAAGAC
AAAAATCCAACCTTCATAAGAGCAGGACAAAATTCCAACTTTCAATAAGC
CAAACAAAAACCCCAAAAAAACAAAAAACATTTTTTCCTTCCCCCACTTG
TTAAACGGGTGGGTGAAAAACCCCCCCCCGTAATTTATGGGGCCCCAAAA
CCCCGGGTTTCGGTAAAAAAATTAAACCCCACTTTCCCAGCAAATATAAA
ACCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p24.b1 MSMg01no461_p24.b1 CHROMAT_FILE:
MSMg01no461_p24.b1 PHD_FILE: MSMg01no461_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:49 2005
         (392 letters)



>mm_chr10_73221490_73222281
          Length = 792

 Score =  559 bits (289), Expect = e-163
 Identities = 303/309 (98%), Gaps = 4/309 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgggtttc--tgaagtatggagatatataagtaacaatgttgataattctg 62
           |||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatttggg--gcaatgaagtatggagatatataagtaacaatgttgataattctg 250

                                                                       
Query: 63  atattagtaaaagacgaagacgtagtctcagagaaaacttcctggtataggcgtaatgct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atattagtaaaagacgaagacgtagtctcagagaaaacttcctggtataggcgtaatgct 190

                                                                       
Query: 123 gttgtgccctttgtaaagattatctttgtgttattcaaatgctgatttctgtgctcccat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gttgtgccctttgtaaagattatctttgtgttattcaaatgctgatttctgtgctcccat 130

                                                                       
Query: 183 aactggttgcaattcctgttctaagaatcttctgtctcgttattgtgtaaacattgcacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aactggttgcaattcctgttctaagaatcttctgtctcgttattgtgtaaacattgcacc 70

                                                                       
Query: 243 tcaactcttctctgattagtcaagatggctagttgtacagccaatgactgagcaggggaa 302
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 69  tcaactcttctctgattagtcaagatggctagttgttcagccaatgactgagcaggggaa 10

                    
Query: 303 atagtaggg 311
           |||||||||
Sbjct: 9   atagtaggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no461_p24.g1 MSMg01no461_p24.g1 CHROMAT_FILE:
MSMg01no461_p24.g1 PHD_FILE: MSMg01no461_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:49 2005
         (421 letters)



>mm_chr10_73026690_73027510
          Length = 821

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaggattttgtagggtgatgccttgatcttcatatgagaaatttgcaaatcaaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaggattttgtagggtgatgccttgatcttcatatgagaaatttgcaaatcaaacaga 260

                                                                       
Query: 61  tttggctatggctgaaaatacgttttcaaataatattattttcctaacttttagctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggctatggctgaaaatacgttttcaaataatattattttcctaacttttagctaaaa 320

                                                                       
Query: 121 tttgttctccgtagtattgttttaacaaaacggaacatgtttgccagcttatactttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgttctccgtagtattgttttaacaaaacggaacatgtttgccagcttatactttatt 380

                                                                       
Query: 181 tctgagctactttccttttctgcatggtaaactgcatattctattttaattcagatgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgagctactttccttttctgcatggtaaactgcatattctattttaattcagatgata 440

                                                                       
Query: 241 tgcagcaaggctggtgtagttctctttttaaacagcaaggggcgctcgtgtgtaagcttg 300
           |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 441 tgcagcaaggctggtgtagttctcttttcaaacagcaaagggcgctcctgtgtaagcttg 500

                                                                       
Query: 301 ctgcctggttcaggagtccatggcatctagaccttagctatagaatgcacaactgacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcctggttcaggagtccatggcatctagaccttagctatagaatgcacaactgacttc 560

                                                                      
Query: 361 ctacctggaaatgtgtctccaagagagagaagctccgcctcctgcgttgctacatatgg 419
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacctggaaatgtatctccaagagagagaagctccgcctcctgcgttgctacatatgg 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)