BAC Information

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BAC

Clone NameMSMg01-466L04
Chromosome10 (Build37)
Map Location 56,449,173 - 56,640,681
singlet/doubletdoublet
Overlap geneLOC100042628
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
Downstream geneEG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466L04.T7 (MSMg01no466_l04.b1)MSMg01-466L04.TJ (MSMg01no466_l04.g1)
ACCAG550583AG550584
length797752
length of high quality
(start - end)
357 (72 - 428)466 (78 - 543)
definitionCHROMAT_FILE: MSMg01no466_l04.b1 PHD_FILE: MSMg01no466_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:17 2005CHROMAT_FILE: MSMg01no466_l04.g1 PHD_FILE: MSMg01no466_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,640,329 - 56,640,681)(56,449,173 - 56,449,638)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCG
GAATTCTCCATCTTAACGACCTTTGTCTTCTGTGCAGGTTTGTGTATAGC
TTTGCAGGAAGCATAAAGGGGGTAGGTAGGAAACGGTCTGGAGGCTCTTT
TCTGAGTGCCCACTGTATCACAACAGCAGAACATTCAGGGCGATTAGCAA
AGGGCTTTGTGGAAGCCTCAGACAGAAATCCAGGGTGCCTGTGAGTGTAT
GGACCTGAATGTCCTACATAATCTTATCTTTTCAATTTCCCTGAATGTTT
ATAAACACATTGATGGCAGTGATAGAAAGAGACAAGCTTTCAATGAATCA
CTTGTGTTATGACTTCGCTATCTTCACATTGGAGACTGGAAGGTTGATTA
TCTAAGGTTTTGATACCCATACTCAGAAACGGCCCAAATGCTGTTTTGAC
ACTTAAGTGACAGAAAATAGGCACTTATTTTCAGGCTTAAACTTTCCTTT
TGTTTTCTTAAATGAAATAACAAGCAAGATCTAAATGTATTTTTAAAATT
CTCCCATGTGCTCTCATATCTGTTCTTATACAATGTCTACTATCTTTAAG
ATAGAACAAATAACTCCCCCCAGGATCTGGGCGATTGCCCCTTCGCCTAC
ATTTTGCAGTAAACCTCCTTGCCAACTTGTTCCTCCTTGTATTTTCCTCT
AGTCCTCTCTGTTCTTTATTGTATGCCGCATGTTTCCGCGCCCTTATTGT
CGTGTCCCTTCTTATGTTTTCCCATTTCTCTATCTTTATCACTTCGN
CCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTGTCCCTGGAGCTGTTAG
TGTAAGCAGACCTTGTGGGTCAAACACACGAAGCCTTTCCACAGCACCTG
TGAGGGTCTTTCTGAAACGGACTCACTGGTTTCCTTCTCAGCAAACTGAC
TGTTCCCCTCCGCTTGACCTTTATTATTCCTCTCCTTACTGCTTGCTCTC
TTTTTACAATAAACCCATGGCCATCAGAAGACACTAATTTGACACTCACA
ACATCAGGACCTTCTTGGCCACCATAGGTCTTTTAAAAATGTGAAAACAT
TGACCCCACAGGGACTTTGTCTCCTGGTGAGACAAGGACATGGTTATTAT
CCACTTATGTCTTGAGGAAATACCTCCTGTTCTCTCTTTCTGACCCATTT
TTCATTCAACACCCTTTCTCCTACTGGCAGAATTAACATCCACCGCCTTC
CTGTCTCATCCCCATGAGGACACATCCCCTTTGTCTGTGATTAGTGTGGG
TTTTAATTGGTCACCTCCAGTAAAATGTCACTCACTTTATCTCTTTGTCA
TCAGGGATGCCTCCTCTGATGCATTTATTAAAAACCGGTGGTTGAAAATG
GCTGAAGCTTTTAATTATTCTTTAAGGGAATCGGGGTCCTTAGCCTTCTC
CATGTAAAACTCCAATAATGTTTCTGGTGGCCCCGTCAACAAACCTAACT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_l04.b1 MSMg01no466_l04.b1 CHROMAT_FILE:
MSMg01no466_l04.b1 PHD_FILE: MSMg01no466_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:17 2005
         (357 letters)



>mm_chr10_56640125_56640881
          Length = 757

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcttctgtgcaggtttgtgtatagctttgcaggaagcataaagggggtaggtaggaaacg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcttctgtgcaggtttgtgtatagctttgcaggaagcataaagggggtaggtaggaaacg 498

                                                                       
Query: 65  gtctggaggctcttttctgagtgcccactgtatcacaacagcagaacattcagggcgatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 497 gtctggaggctcttttctgagtgcccactgtatcacaacagcagaacgttcagggcgatt 438

                                                                       
Query: 125 agcaaagggctttgtggaagcctcagacagaaatccagggtgcctgtgagtgtatggacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcaaagggctttgtggaagcctcagacagaaatccagggtgcctgtgagtgtatggacc 378

                                                                       
Query: 185 tgaatgtcctacataatcttatcttttcaatttccctgaatgtttataaacacattgatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 377 tgaatgtcctacataatcttatcttttcaatttccctgaatgtttataaacacgttgatg 318

                                                                       
Query: 245 gcagtgatagaaagagacaagctttcaatgaatcacttgtgttatgacttcgctatcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcagtgatagaaagagacaagctttcaatgaatcacttgtgttatgacttcgctatcttc 258

                                                                
Query: 305 acattggagactggaaggttgattatctaaggttttgatacccatactcagaa 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acattggagactggaaggttgattatctaaggttttgatacccatactcagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no466_l04.g1 MSMg01no466_l04.g1 CHROMAT_FILE:
MSMg01no466_l04.g1 PHD_FILE: MSMg01no466_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:17 2005
         (466 letters)



>mm_chr10_56448973_56449838
          Length = 866

 Score =  862 bits (446), Expect = 0.0
 Identities = 461/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttgtccctggagctgttagtgtaagcagaccttgtgggtcaaacacacgaagcctt 60
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttgtccccagagctgttagtgtaagcagaccttgtgggtcaaacacacgaagcctt 260

                                                                       
Query: 61  tccacagcacctgtgagggtctttctgaaacggactcactggtttccttctcagcaaact 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tccacagcacctgtgagggtctttctgaaagggactcactggtttccttctcagcaaact 320

                                                                       
Query: 121 gactgttcccctccgcttgacctttattattcctctccttactgcttgctctctttttac 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gactgttcccctccgcttgacctttattatttctctccttactgcttgctctctttttac 380

                                                                       
Query: 181 aataaacccatggccatcagaagacactaatttgacactcacaacatcaggaccttcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaacccatggccatcagaagacactaatttgacactcacaacatcaggaccttcttg 440

                                                                       
Query: 241 gccaccataggtcttttaaaaatgtgaaaacattgaccccacagggactttgtctcctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaccataggtcttttaaaaatgtgaaaacattgaccccacagggactttgtctcctgg 500

                                                                       
Query: 301 tgagacaaggacatggttattatccacttatgtcttgaggaaatacctcctgttctctct 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagataaggacatggttattatccacttatgtcttgaggaaatacctcctgttctctct 560

                                                                       
Query: 361 ttctgacccatttttcattcaacaccctttctcctactggcagaattaacatccaccgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgacccatttttcattcaacaccctttctcctactggcagaattaacatccaccgcc 620

                                                         
Query: 421 ttcctgtctcatccccatgaggacacatcccctttgtctgtgatta 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcctgtctcatccccatgaggacacatcccctttgtctgtgatta 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)