BAC Information

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BAC

Clone NameMSMg01-467F12
Chromosome10 (Build37)
Map Location 115,661,693 - 115,661,921
singlet/doubletsinglet
Overlap genePtprr
Upstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, 4933416C03Rik
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467F12.T7 (MSMg01no467_f12.b1)MSMg01-467F12.TJ (MSMg01no467_f12.g1)
ACCAG551076AG551077
length732735
length of high quality
(start - end)
247 (69 - 315)238 (72 - 309)
definitionCHROMAT_FILE: MSMg01no467_f12.b1 PHD_FILE: MSMg01no467_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:11 2005CHROMAT_FILE: MSMg01no467_f12.g1 PHD_FILE: MSMg01no467_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACATTTCCCAGGCGAGTACCACTGGATTCAAACACTTCAAAAA
ACATTTTTTTCTCTAAAAATAAATTTAAAATTTTGGTCTGAAAGGAGAAT
CATCCTTTAATGCTTCTTCGCTGTATACTTTCTACCCAGAAGCACAAGAA
ACCATAGATTTCACCTAATAACAAGAACCTAAAACAAAGAAAGGAGCCTG
GCACACCATCTGGAAGAACTATCAAGTCCCTGAATTAACTTCTCCCTGCT
GCTCTGCACCTCTGTTTTTTACACCAGACACTTGGCACTGTATGCAGTGG
CCTGACTCACAGCCCTGTGCTCTTTAAGTTACAGCCATTCATATAAATAC
ATATTCTTTTGTATTACATATGATTTCTCCATTCAAATGTCTTCATTTTT
CTGAAATTCATTTAAAATTATTAAGCATCCTATCATTTCTGCCACAAATA
TGTTTATTAACAACTTATAGTACATGTTCTCAATTCAGAATTGTTTACAA
CAACTTGCTATGTTCAGTCCTGATACCCAATATATACTACTTATGTGATC
CTTATTTCTGGAAAAATCCACCCAACTGTGTTCTTGCTTTTGAATTAACC
CATAGACTATTTTGCGCGACCACCCTTTTACAATTTCTTGTCTGTTTCAC
CCCCGATTCCTGAATTATTCACATTGTCCTAT
CATGAAGTGTGAGGCCTGGGGGNCGCCTGGTTTCAAATAGGGGTGAACTA
TAGAAGTTTCGCGAAACATCTACAGTTGAATCCTTCTTAACAGTCTGCTT
TACGGGAACCTCTATCACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGG
ATCTTCCCTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACC
AATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACTTTCAAACC
AGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGT
GCAAGATTCATGATTGAGAGAAAACGAAACCCTGTCCCTCTTAAGGAGAA
TTATCCTTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGG
CCGAGTTGACGTCACGGGGAAGGCAGAGTACAAGTAGTCACAAAATACCC
TTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGC
GCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACATGTTTCCACTT
TGCCCAGGTCTCCATGATTCCCAGCACAGGACATGAGTCTCACCTATGGA
CACTTGTTCCCTTTACTGGAGGGGTAAGTTACTGTTTTTTGTATCTGGCT
CTTAACCTAAAATGGCCTCTGGGGGACTCATATCCTTGTACCCCAATCCT
TTGTAATCCCCCATACCCGTTTTCTGTATCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_f12.b1 MSMg01no467_f12.b1 CHROMAT_FILE:
MSMg01no467_f12.b1 PHD_FILE: MSMg01no467_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:11 2005
         (247 letters)



>mm_chr10_115661492_115662137
          Length = 646

 Score =  360 bits (186), Expect = e-104
 Identities = 219/230 (95%), Gaps = 2/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gagtaccactggattcaaacacttcaaaaaa-catttttttctctaaaaataaatttaaa 61
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||
Sbjct: 202 gagtaccactggattcaaacacttcaaaaaaacatttttttctctaaaaataaataaaaa 261

                                                                       
Query: 62  attttggtctgaaaggagaatcatcctttaatgcttcttcgctgtatactttctacccag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attttggtctgaaaggagaatcatcctttaatgcttcttcgctgtatactttctacccag 321

                                                                       
Query: 122 aagcacaagaaaccatagatttcacctaataacaagaacctaaaacaaagaaaggagcct 181
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 322 aagcacaagaaaccatagatttcagctaataacaagaacctaaaacaaaaaaaggagcct 381

                                                             
Query: 182 ggcacaccatctggaagaactatcaagtccctgaattaacttctccctgc 231
           ||||||||||||||| ||||||||||| | |||||||  ||| |||||||
Sbjct: 382 ggcacaccatctggaggaactatcaaggctctgaatttcctt-tccctgc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)