BAC Information

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BAC

Clone NameMSMg01-467P11
Chromosome10 (Build37)
Map Location 57,162,880 - 57,163,414
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P11.T7 (MSMg01no467_p11.b1)MSMg01-467P11.TJ (MSMg01no467_p11.g1)
ACCAG551548AG551549
length732746
length of high quality
(start - end)
157 (154 - 310)535 (71 - 605)
definitionCHROMAT_FILE: MSMg01no467_p11.b1 PHD_FILE: MSMg01no467_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:59 2005CHROMAT_FILE: MSMg01no467_p11.g1 PHD_FILE: MSMg01no467_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCCGCTAAACGAACACTAATTTCAGAACACCGCGGAATCAT
ATAATTTCAACACAATATGCACAGNTCTGAGNCCTGTGCAGCTCCCAAAG
GAGAATTGTCAACCTCAGATTCAGCAAXXXXXXXXXXXXXXXXXXXXXXX
XXXGGGGCAGTGTTTCTGTTTTTTTCCCCACAGAATGTTACAGAAGCATA
CTAGCTTCCAGAATGATTCATGTGACTGTCTGATCTGTGAGTTTATGAGT
GCCCTGACAGTGGTGACAAGAAAGTTGTGTTGAGTGCACAGAGAAAGAAG
AATCAGGTTGATCAGTCTCTTGCAACAAGATGAAGAAACTTCATATCTCC
GATAAGGGCTACAACAAGGAGAGCTGACCTGGCATCAATTTGAGGACAAC
TATAAATGATGACCCGTGAGGCAAGGTACTGCTACAGTGTATTTAACAAG
ATTTCATCAGAGACACTGATTTTGGCCAGTCAGGCCAACTCCCCTATAGC
TGTGAAAGCTTTTGTACCTTACCTATATGCTATATTGTTAGACAACTTTA
AGAGCTAAGATCACCAATCTTGATCAGTCTTTTCCTATTCATTTGCAATT
TTTGTTCTTTAACCAATTGTGGACATCCTAATTTATATTATTTATCCGCC
GTTATGATTTTGTTACAGAAACCTGCCTAAGTCTTGCCGCCCGCTTCGAC
CTTGATTTCTTACCCTTTGTCTATAATCCTTT
GAATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGATACAGACAAAGCTTGAACAATGGTG
TTTCAAAAATTTCTCCTCAAATTTAAATTTTCAAAAACTGGGAATTTACT
CTATTTTCTAGCTAAAAATGAGGTCCCTAGTTTCAAGGGAGCTAGCATCT
AATTGGGAACTGCAGTATGAGCTCAGCGCTCTACAACAAGAATACCAGGA
TGCAAAGTATATATGTAAATTATTGGTCTAGTTCTCCTGTGTCCTAATCA
TTTAGAGTTTTATTTTGAGGGCCAGATGATGCTTGTATATACAGTAGGTG
TTGTTACAGAGTTTTAAGCGTGATGGTCCTGTCTCCCTTAAGATGCATGT
GACCCGGTGACTTACAGTGTCAGACACTCAATAGCCATCAAAATTCAACT
CAAGATAGTGGCTCTCAAGTTTGTGGTTTTACTCTGCTGAAGATTGAAAA
TACAGACATCACAGAGAACAGACAGTGAATGTAAACATTAGGAGGAGATG
TTGGTTCTCTGTTTGCCAGCTGACCATCTTCCAGCTAGGGAGGCTGAAGT
CTCCTCAGTCTCTCTGTGACATGTGCCTTGGTAGCTTCTGACCTTGACCT
CTGACCTTGGACGGTAACTGTTATTCCCGGGGAGATGTTCCCTCTAATAA
CTTGACGGGGGATTCTTGAAGGTGTGACATCCAATCTTTGGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p11.g1 MSMg01no467_p11.g1 CHROMAT_FILE:
MSMg01no467_p11.g1 PHD_FILE: MSMg01no467_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:59 2005
         (535 letters)



>mm_chr10_57162680_57163614
          Length = 935

 Score =  859 bits (444), Expect = 0.0
 Identities = 513/540 (95%), Gaps = 10/540 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatacagacaaagcttgaacaatggtgtttcaaaaatttctcctcaaatttaaattt 60
           |||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 735 actgatactgacagagcttgaacaatggtgtttcaaaaacttcccctcaaatttaaattt 676

                                                                       
Query: 61  tcaaaaactgggaatttactctattttctagctaaaaatgaggtccctagtttcaaggga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 675 taaaaaactgggaatttactctattttctagctaaaaatgaggtccctaatttcaaggga 616

                                                                       
Query: 121 gctagcatctaattgggaactgcagtatgagctcagcgctctacaacaagaataccagga 180
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 615 gctagcatcaaattgggaactgcagtatgagctcagtgctctacaacaagaataccagga 556

                                                                       
Query: 181 tgcaaagtatatatgtaaattattggtctagttctcctgtgtcctaatcatttagagttt 240
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 555 tgcaaagtatgtatgtaaattattggtctagtgctcctgtgtcctaatcatttagagttt 496

                                                                       
Query: 241 t----attttgagggccagatgatgcttgtatatacagtaggtgttgttacagagtttta 296
           |    |    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tacaca----gagggccagatgatgcttgtatatacagtaggtgttgttacagagtttta 440

                                                                       
Query: 297 agcgtgatggtcctgtctcccttaagatgcatgtgacccggtgacttacagtgtcagaca 356
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agcgtgacagtcctgtctcccttaagatgcatgtgacccggtgacttacagtgtcagaca 380

                                                                       
Query: 357 ctcaatagccatcaaaattcaactcaagatagtggctctcaagtttgtggttttactctg 416
           ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcaatatccatcaaaattcatctcaagatagtggctctcaagtttgtggttttactctg 320

                                                                       
Query: 417 -ctgaagattgaaaatacagacatcacagagaacagacagtgaatgtaaacattaggagg 475
            | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 319 ac-gaagattgaaaatacagacatcagagagaacagacagtgaatgtaaacattaggagg 261

                                                                       
Query: 476 agatgttggttctctgtttgccagctgaccatcttccagctagggaggctgaagtctcct 535
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 260 agatgttggttctctgtttgccagctgactgtcttccagctagggaggctgaagtctcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)