BAC Information

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BAC

Clone NameMSMg01-468L02
Chromosome10 (Build37)
Map Location 56,354,572 - 56,354,744
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468L02.T7 (MSMg01no468_l02.b1)MSMg01-468L02.TJ (MSMg01no468_l02.g1)
ACCAG552105AG552106
length807794
length of high quality
(start - end)
177 (76 - 252)247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no468_l02.b1 PHD_FILE: MSMg01no468_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:00 2005CHROMAT_FILE: MSMg01no468_l02.g1 PHD_FILE: MSMg01no468_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTAAATACCGCGGA
ATTCTGCAGTCTTTTGCCGTATGGGAAGAGTCACAGTTGCACACACACAC
TGCTGTCTACAGTGTGTGTCAAGTGTGTACAAGGTCTGCACCTTCATGCT
TTCTCTGCCAATCTGTTTGTATATGACATAGGGTTTTGGAAGGGACTGAA
AAAAAATGTGTAGAGGGAAAAGTAAAAAACACATAATGCAAACGCTCTTC
GGAAGGTAGATTATGAAAACCACTCATAAACTTTTAAGTCTAGGACCAGT
GTGTTCCGAATAACCTTACTGCATACTTTTTTTTTCAACCCTCTTCACTC
CTTAACAGTTGTTGCTAGCTTCTTTCTTACACATTTGGAAACCTTACTTC
TGGCCTACGTATCTACAGCTGTGACCACAGGCCCCTTCTTTTTCTCATTA
TGCCGCCTACCTATTTGAAACAATATCCTTTATTGCTTTCCTAACTCTAA
AATGTACTGTGTCTAAAACAAATTCTTGTTCTCACTTTCTTCAATACGAT
CCAATACACTAATATTAGTTTTGCTCTGCTTTCTTACATCTTTTAACTCC
CCCCTCTTTTTTTTTTGCTCTCCATCTTTCTCTCTACTTTTTCTAATCCA
CTTCTCTCTACTTCCCGTTTCTTTTACTTCTCCTCTCACCTTTCCCTTCT
CACTTTTTCCCTACCTTTATTCCTTTTTTTCTTTTATATTACCTTCTCCT
TTTTTTTTTTCTATCTTCATATTTATAGACCATTTTATTACCAACGTTCA
CACAACC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTGCCGNAATTCCAATAGGAGAGACAGAGAGAGAGAGACAG
AGAGAGACAGGGAGAGAGAGTCCTAAATATAGAAATATAATCTTCTGAGT
CTGAACAATTTATCCCTATAACCAAAACATAAGTGTGTTCTTCACTCTTC
AAAGAAACCTGTCCTTGAAGAAGACAGGGCCTATTACAGAATACCACAAT
GGATCAAAATGTGTTGAAGGGATTTTACTTCATCTTCTGGCATCTCTCAG
CTCCAAACTTTTATGTGGTTTTTTACAGACACTGTGGAGGTTTAAAGAAA
GAGGCTACTTGGGTTTGAAAGTACTAGACATAACTTGAGGTAGCAAAAGG
TGTCCATCCTTCAGTAGGAGGGAAGTAGAACCTCAGAGGAGACATTGGCC
TCCTTGAGAGAGGTCTCTCCCTCTGCTACTAGAGGATGTGCCTGCTCACC
AACATAGTCAAGATAGAGAATCTATTGCTCATCTCTTTTTATATTTCTGG
CCTTGTAATTTCTTCTACAAGTTTATTGACCTGCACTCAGCTGGGACTCT
GAAGTTCTGCTTTTCTTATTACGATAATTGTGCTTATTTCCTCTGAACTT
TTGCTACCCCCCAGATCTTTGTACCAAAATAGAATTAATCATAAATTTCT
TCTTACATTGTGGTATACAGACACTATAGTTAACTTGTTATTTTTTATGT
AATAATATTTCCTTCCTCACACTAACCTCCATTTTTTCATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_l02.b1 MSMg01no468_l02.b1 CHROMAT_FILE:
MSMg01no468_l02.b1 PHD_FILE: MSMg01no468_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:00 2005
         (177 letters)



>mm_chr10_56354372_56354946
          Length = 575

 Score =  327 bits (169), Expect = 3e-94
 Identities = 173/175 (98%), Gaps = 2/175 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtcacagttgcacacacacactgctgtctacagtgtgtgtcaagtgtgtacaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtcacagttgcacacacacactgctgtctacagtgtgtgtcaagtgtgtacaaggt 260

                                                                       
Query: 61  ctgcaccttcatgctttctctgccaatctgtttgtatatgacatagggttttggaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaccttcatgctttctctgccaatctgtttgtatatgacatagggttttggaaggga 320

                                                                  
Query: 121 ctgaaaaaaaatgtgtagagggaaaagtaaaaaacacataatgcaaacgctcttc 175
           ||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 321 ctgaaaaaaaatgtgtagagggaaaagtaaaaaaca--taatgcaaacgctcttc 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 575
Length adjustment: 8
Effective length of query: 169
Effective length of database: 567
Effective search space:    95823
Effective search space used:    95823
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)