BAC Information

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BAC

Clone NameMSMg01-468O12
Chromosome10 (Build37)
Map Location 127,795,711 - 127,796,113
singlet/doubletsinglet
Overlap geneCs
Upstream geneInhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4
Downstream geneCoq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468O12.T7 (MSMg01no468_o12.b1)MSMg01-468O12.TJ (MSMg01no468_o12.g1)
ACCAG552268AG552269
length761768
length of high quality
(start - end)		505 (81 - 585)399 (74 - 472)
definitionCHROMAT_FILE: MSMg01no468_o12.b1 PHD_FILE: MSMg01no468_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:18 2005CHROMAT_FILE: MSMg01no468_o12.g1 PHD_FILE: MSMg01no468_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGATGATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGACAATCC
GCGGAATTCAGGACCACTACAACGAGGATAGCTCTACTCACAATGGGCTA
GACCCTCCCCCACTGATCACTAAGTAAGAAAATGTCCTGCAACTGGGTCT
TATAGTGGCATTTTCTCAATTGAGGCTCCATCCTCTGATGACTCTAATTT
GGGGCAGGTTTGACATAAAACAAGTCAGTTCACCAGGCAAGCACTCCACT
CACTCTTCCCTGTCAGTTTGATCAGAGAAGTCATGGACCCATCAGAGTTG
GGGCTCCAACCAGCATATGTTCTGCTTTTTTTAGGATCACCACAGAGGGA
ATGTCCTACTGTCTTCTAGGGAAGCCATGTGGTCAGTGAAAGGACAGGAA
CCAGAAACACCCAAGACCAAGTTCTCAACGCAAAGGAGATTTATTTTTTA
TTTTGTAAAATATGTTATCTTTTTTTTATTAGATATTTTCTTTACTTACA
TTTCAAATGCTATCCTGAAAGTTCCCTGTACCCTCACCCCGCCCTGCTCC
CCTACCTACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGG
CATATAAAGTTTGCAAGACCAAGGTGCTCGTTTTTTCTATGATGGCCGAC
TAGACCACCTACTAGGGAAATTTATTTGCCCAAAGGGACAAAGGCAAAAA
GACTGCCTCTTGATGGGACGTATTATGAATGCCTCCCATGGCTATTGTAG
TGCCTAATAGT

NCTGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCAGACAATCACTCTGTAGACACTGGCCTCAGACTCA
TAAAGAACTGCCTGCCTCTGCTTCCCAAGGGCTAGGATTAAAGGCATGTG
CCACTATGCCCAGCAATGGGAGCTAGGTATTGGGGTATGTTTCAAAAAAA
ACAAAAACAAAACAACTTCTTAAAGTTAGTCAGGGAACACAGGGTCTGTA
GCATATGGGAAGAAACATCTTGAAAGGGTTGAAACTAGGTAAGAAATGAG
GAAAGAAAGCTGAAAAGCCTAGGGTAATTGCCTCACATAAGGGAGTCCAA
CTTCCCAGGAGCGCCCTCTTCTGGTCATCATTACTAAACTGTGATGGGTA
GCTGAGAATGTGTGTGAGCTGTGTATTTGATATTCCTATCAGTGGAAGTA
GGTGTGGGGAGTGGCCATCCGCTGACAGGGCTCCACGGTGTTTTGAGCCC
CCGATGTCCACATGACCCAAGACACGTCTGTGTCATAATCACCCTCTTCC
CTTTCTCCCTTCGGCTCTCTCTTATCTTCCTCCCGTGACCATGATTGTGG
TAATGCATCCTTCGCTCTCTGCCATTCGTCTGCCCATCGCCTTTTCATAA
TCTTACCTAGTTCTTTTTCTTTTTTTCTGTATGGGCCTGCTGCCGTTCCT
CTCCTTTCCCTTTCCTCCTGTGTTCGATATTCTCTTTTTCTTCTGTATTC
TCCTTTATTCTTCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_o12.g1 MSMg01no468_o12.g1 CHROMAT_FILE:
MSMg01no468_o12.g1 PHD_FILE: MSMg01no468_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:18 2005
         (399 letters)



>mm_chr10_127795515_127796313
          Length = 799

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/403 (98%), Gaps = 4/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagacactggcctcagactcataaagaactgcctgcctctgcttcc----caag 56
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 197 actctgtagacactggcctcagactcataaagaactgcctgcctctgcttccttcccaag 256

                                                                       
Query: 57  ggctaggattaaaggcatgtgccactatgcccagcaatgggagctaggtattggggtatg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggctaggattaaaggcatgtgccactatgcccagcaatgggagctaggtattggggtatg 316

                                                                       
Query: 117 tttcaaaaaaaacaaaaacaaaacaacttcttaaagttagtcagggaacacagggtctgt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttcaaaaaaaacaaaaacaaaacaacttcttaaagttagtcagggaacacagggtctgt 376

                                                                       
Query: 177 agcatatgggaagaaacatcttgaaagggttgaaactaggtaagaaatgaggaaagaaag 236
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 377 agcaaatgggaagaaacatcttgaaagggttgaaactaggtaagaaataaggaaagaaag 436

                                                                       
Query: 237 ctgaaaagcctagggtaattgcctcacataagggagtccaacttcccaggagcgccctct 296
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgaaaagcctagggaaattgcctcacataagggagtccaacttcccaggagcgccctct 496

                                                                       
Query: 297 tctggtcatcattactaaactgtgatgggtagctgagaatgtgtgtgagctgtgtatttg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctggtcatcattactaaactgtgatgggtagctgagaatgtgtgtgagctgtgtatttg 556

                                                      
Query: 357 atattcctatcagtggaagtaggtgtggggagtggccatccgc 399
           ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 atattcctatcagtggaagtaggtgtggggagtgggcatccgc 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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