BAC Information

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BAC

Clone NameMSMg01-470B24
Chromosome10 (Build37)
Map Location 38,973,702 - 38,973,937
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470B24.T7 (MSMg01no470_b24.b1)MSMg01-470B24.TJ (MSMg01no470_b24.g1)
ACCAG553200AG553201
length754785
length of high quality
(start - end)
435 (76 - 510)241 (83 - 323)
definitionCHROMAT_FILE: MSMg01no470_b24.b1 PHD_FILE: MSMg01no470_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:55 2005CHROMAT_FILE: MSMg01no470_b24.g1 PHD_FILE: MSMg01no470_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATC
CGCGGAATTCTCACCTGTATCAATACCGAATGGCAGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
AAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTT
CCTCAGAAAATTGGACATAGTACTACCGTATTATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGATTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCCA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACTTTC
CAAAGGAACTCACCCCATATGTACTCCCCGATAAATGCATATTACCCCCC
ACCCTACGTTACCCCACTAACTCAGATCCACCTCCTAAACCCTTGTAACC
CCCCCACAAATGATTACTCGGAGGGGGGACCCTTCTCCCCCCCTTTATAC
ATGG
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGGCACTCAGCAAGG
ACTGGAGCTTGGGCAGGAATTCCTCTCTGGTGATTTTCTACAGTAAAAAA
AAAAAACTTGCACAAGGGCCAGAGCTGGATCTCAATGGTAGAATGTTTGC
CTAACATCCATGAAGTCCTAGTTCAAGTCCAAGAACTACCCAGCTTCAAA
ACTGTACAACTTTACACAAGAGCAAAAGCATCTAACGCAGGATGAGGAGG
GAGAGATGGGTTTGAAGGAAGTTTTTTTTTTTTTTGANNTTANCNANGTA
TTTTTATTTCTAAGTTTTTTTCTAACTCTCTGAATGCCGGCGCGGCGTTT
TCTCTTTCGGACTGATTTACTATCGCCCCCTCTAAGATCCCACTCTTTCT
ATCCTTTATCTCTTTCATTATTTTTTCCCCCTTTTTCTCATTTATCCCCC
CCTCCCGCTTTTATCTCCCCCTTTTTTCTCTCCCCCCCTTTACTGTTCCT
TTCTATCCCCTCTTTCTTATCTTGCTCTTCCCTTTCTCTTACCCACTCTC
TCCCATCCTATCCTCCCATCATCGTCTTTCTTTCCTTTTCCCCCCCTTTT
CTTCCCCCTTCCCTTTCTTTTTTTCTTCCCCCCCTTCTTTCGCTTCTCCC
TATTATTTCTCTTCCTCTTCCTCATTCTCTTCTATTTATATTTCCTTNGA
GCTCTGCTCCCTTATCCCCCTACTTTTCGTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_b24.g1 MSMg01no470_b24.g1 CHROMAT_FILE:
MSMg01no470_b24.g1 PHD_FILE: MSMg01no470_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:56 2005
         (241 letters)



>mm_chr10_38973502_38974140
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 233/239 (97%), Gaps = 4/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggcactcagcaaggactggagcttgggcaggaattcctctctggtgattttctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggcactcagcaaggactggagcttgggcaggaattcctctctggtgattttctaca 260

                                                                       
Query: 61  gtaaaaaaaaaaaacttgcacaagggccagagctggatctcaatggtagaatgtttgcct 120
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaaaaaaa---cttgcacaagggccagagctggatctcaatggtagaatgtttgcct 317

                                                                       
Query: 121 aacatccatgaagtcctagttcaagtccaagaactacccagcttcaaaactgtacaactt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aacatccacgaagtcctagttcaagtccaagaactacccagcttcaaaactgtacaactt 377

                                                                      
Query: 181 tacacaagagcaaaagcatct-aacgcaggatgaggagggagagatgggtttgaaggaa 238
           ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacacaaaagcaaaagcatcttaacgcaggatgaggagggagagatgggtttgaaggaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 639
Length adjustment: 9
Effective length of query: 232
Effective length of database: 630
Effective search space:   146160
Effective search space used:   146160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)