BAC Information

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BAC

Clone NameMSMg01-470P14
Chromosome10 (Build37)
Map Location 53,149,698 - 53,149,943
singlet/doubletsinglet
Overlap genenone
Upstream geneD10Ertd438e, EG629689, Zfa, Slc35f1, Pln
Downstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470P14.T7 (MSMg01no470_p14.b1)MSMg01-470P14.TJ (MSMg01no470_p14.g1)
ACCAG553850AG553851
length753785
length of high quality
(start - end)
187 (326 - 512)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no470_p14.b1 PHD_FILE: MSMg01no470_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:03 2005CHROMAT_FILE: MSMg01no470_p14.g1 PHD_FILE: MSMg01no470_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGACAACATCCGCGGAAT
CTTTGTATTTCCTTACACAATGGAGNACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGATGGGCCTGGAGGGTATCATCCTG
AGTGAGGTAACCCAATCACAAAAGAACTCACACGATATGTACTCACTGAT
AAATGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACTAT
TTGCAAAACACATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGACACT
TTGCCCCTTCTTAGAANTTGGTATCAAAACACCCATGGAAGGAGTTACAG
AGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCA
CACCTGGGGATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGCA
TACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTATG
AGGCTATGCTGGTGCCTGGCAAACACAGAAGTGAATGTTCACAGTCAGCT
ATTGCATGGAACACAGGGCCCCCCAACGGAGGAGCTAGAGAAAGTACCCT
AGGAGCTAAACGGGACTGCAACCCTATAGGCGCATATGCATCAGAACATG
GTCTATTTCTTCCTCCTCTGCCAATACACGCCCCTTGTTCTCACATACTT
CCACCGCCTTACTAACCGCCAACACCCCCGCCTAAAAACGCTTTTTTCCC
GTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACACCAATGGGGGAAATTATTTATGGT
ATTGCAAGGGTGAAAAGGAGATTTCTTCAAACATGCTGGCATGTGTTACT
CGGCTCTAGTGTTTAGACATATGGAGTTACCATGCCTGTTAAATTATTAA
ATGTGCCAGAAGACTTTGGAATCCCTTGAGAACATGTTGTGAGGAGGGCT
GTTTTATCCCCATTATGCCTTCAACACACAAATGTCACATCAGCTTGAAG
TCTGCAGAAGGACAGAGCTTGATATTCCACCTAGTCAGCTCTTGTATTGT
TTTTGCCCTTTATTTTGTGCAAACCACCCTCAGCTTCCTCACGACTCCAG
GAGATTAAGGCCAGTGCAGCTTAGCTGACTTGATCTCCAGTGAAATCCAC
TCAACTAGAGAGTCCTGTATTTCACCCCCCTTCTTATTTACCACGCCCCC
CTTATTCCTTCCCTATTTTATGTGTTCCACTGTTTCTTTTCCTTATATCC
TTCCTACCTAATCCTTCTTTTATTCTCTTTCTTTTCTACCATCCATCTCT
TCCTTCCTTCCTCCCCCTCTTTGCTTTCCTCTCCCCCCCCTTTCCTTTCC
CTCCCCCCTTCTCTTATTCCTTCCCCCTTTTTTCTCCTCTCCCTTTTTTT
TTCTTCTCCCCTCCCCCTTGCTTCTTATATTTTTTTCTGCTCTCATCTTC
TCCTACTCTCATCCACCTTTCCTTCTCCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_p14.g1 MSMg01no470_p14.g1 CHROMAT_FILE:
MSMg01no470_p14.g1 PHD_FILE: MSMg01no470_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:04 2005
         (246 letters)



>mm_chr10_53149498_53150143
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaccaatgggggaaattatttatggtattgcaagggtgaaaaggagatttcttcaaaca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acactaatgggggaaattatttatggtattgcaagggtgaaaaggagatttcttcaaaca 387

                                                                       
Query: 61  tgctggcatgtgttactcggctctagtgtttagacatatggagttaccatgcctgttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgctggcatgtgttactcggctctagtgtttagacatatggagttaccatgcctgttaaa 327

                                                                       
Query: 121 ttattaaatgtgccagaagactttggaatcccttgagaacatgttgtgaggagggctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 326 ttattaaatgtgccagaagactttggaatcccttgagaacatgttgtgaggagggctgtc 267

                                                                       
Query: 181 ttatccccattatgccttcaacacacaaatgtcacatcagcttgaagtctgcagaaggac 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acatccccattatgccttcaacacacaaatgtcacatcagcttgaagtctgcagaaggac 207

                 
Query: 241 agagct 246
           ||||||
Sbjct: 206 agagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)