Query= MSMg01no471_a12.b1 MSMg01no471_a12.b1 CHROMAT_FILE:
MSMg01no471_a12.b1 PHD_FILE: MSMg01no471_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:08 2005
(635 letters)
>mm_chr10_61385561_61386595
Length = 1035
Score = 1042 bits (539), Expect = 0.0
Identities = 618/663 (93%), Gaps = 32/663 (4%)
Strand = Plus / Plus
Query: 1 agattctcaccaggcttcagctatataaagatgaagaacacacaggcaggcccttagagg 60
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 177 agattctcaccaggctacagctatataaagatgaagaacacacaggcaagcccttagagg 236
Query: 61 aaggaaaattgcattaaacagaaacagcaacaagacccagacctatgtgttatctagaag 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagtaaaattgcattaaacagaaacagcaacaagacccagacctatgtgttatctagaag 296
Query: 121 cctgaggctgatcgctggtgacttagagatgagtagctcatttcctcttgctgagaagtt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 297 cctgaggctgatcgctggtgacttagagatgaatagctcatttcctcttgctgagaagtt 356
Query: 181 agagtatcctacacgagagagctgaggaagagtcaaagagccttggatggtgagaacc-t 239
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 357 agagtatcctactcgagagagccgaggaagagtcaaagagccttggatggtgagaaccct 416
Query: 240 gtttt----aatgcctgtggtaggaggagtcattcattcattcactcaatcaacatttac 295
| ||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 417 g----ggaaaatgcctgtggtaggagaagtcattcattcattcactgaatcaacatttac 472
Query: 296 caagtgctcagggcccttcattcattcaccaaatcactaattattctaaccaacattgca 355
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 473 caagtgctcagggccctttattcattcaccaaatcactaattattctaaccagcattgca 532
Query: 356 tggagtgcacaaggcatagcgctaattaagcttctgtgacatcacatctgctcttgggac 415
||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 533 tggggtgcacaaggcatagcgctaattaggcttctgtgacatgacatctgctcttgggac 592
Query: 416 aagcctgggctgggagtggtagcccttttcgctgaggtggagtctgagctttcaagcct- 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagcctgggctgggagtggtagcccttttcgctgaggtggagtctgagctttcaagcctt 652
Query: 475 ----------------------atcacaatactgctgtcatcagaggggagcaccgggca 512
||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttgtttactcccctgacagcctatcacaatactgctgtcatcagaggggagcaccgggca 712
Query: 513 atcaagttacaaaaaaattaagctaaaataaagatcccatgatgttcggagaaagttggg 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 atcaagttacaaaaaaattaagctaaaataaagatcccatgatgttcggagaaagttggg 772
Query: 573 ctgcattcacaagcatccactacaggcaatggtggcttattaccttagacagcacctagg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctgcattcacaagcatccactacaggcaatggtggcttattaccttagacagcacctagg 832
Query: 633 ctc 635
|||
Sbjct: 833 ctc 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_a12.g1 MSMg01no471_a12.g1 CHROMAT_FILE:
MSMg01no471_a12.g1 PHD_FILE: MSMg01no471_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:08 2005
(575 letters)
>mm_chr10_61626188_61627162
Length = 975
Score = 594 bits (307), Expect = e-174
Identities = 307/307 (100%)
Strand = Plus / Minus
Query: 269 attgaacctggaatactctgattggatgaggctgccagccaatgagcttttagggatccg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 attgaacctggaatactctgattggatgaggctgccagccaatgagcttttagggatccg 916
Query: 329 tcactgccacccctgtgctggggtcataggcatttgagctgtacctggctttttaatttt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tcactgccacccctgtgctggggtcataggcatttgagctgtacctggctttttaatttt 856
Query: 389 ttcaatgggtgctaacaacccaaactcaggccctcagacctgcatgtgcttgactttacc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttcaatgggtgctaacaacccaaactcaggccctcagacctgcatgtgcttgactttacc 796
Query: 449 agctaagccatctcaccagctatgcatctccgttttagacaaaggctcacatagcctggg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agctaagccatctcaccagctatgcatctccgttttagacaaaggctcacatagcctggg 736
Query: 509 ttggcttcaaacttcctgtgtgagcagggttgagtttacactcctgactctcccacctcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttggcttcaaacttcctgtgtgagcagggttgagtttacactcctgactctcccacctcc 676
Query: 569 actccga 575
|||||||
Sbjct: 675 actccga 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
