BAC Information

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BAC

Clone NameMSMg01-471C20
Chromosome10 (Build37)
Map Location 35,172,399 - 35,173,049
singlet/doubletsinglet
Overlap genenone
Upstream geneFrk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471C20.T7 (MSMg01no471_c20.b1)MSMg01-471C20.TJ (MSMg01no471_c20.g1)
ACCAG554006AG554007
length7551,668
length of high quality
(start - end)		655 (49 - 703)---
definitionCHROMAT_FILE: MSMg01no471_c20.b1 PHD_FILE: MSMg01no471_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:20 2005CHROMAT_FILE: MSMg01no471_c20.g1 PHD_FILE: MSMg01no471_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAACTATTAATGTTTTCATAGTTAACATGAACAAGTAAAAT
CCTCTTTTATGTTCCAAGTACTCTTTAAAAAAAAAACAATTTAGGTAATA
TATTAGTAACACTCAAGAGCACCGTATCTTATTATTTTGTAAATTTAAAT
TGTCGTTTCACATCAAGAAATATCTACCTGTTTGGAATGGCAAGAAAATA
TTAAATTCATCTCCTCTAGGTTACTCTAGGCTATACATTTTTTTCTACTT
CAAAACAATTTTCATTTTATAAACTATGTTATAAAAATTATGTGGACATG
TAAATCTGTATACATAATAGTGACTACTGACATTAATAATTCAAGGATAC
TCAACATTAGAATTAGAAAGAGGAAGAATGAAGAGTTTTATTGAGTGTCC
CTCTATTGTTTTTAAAAAGATAACATATCTGTTTGCAATACATATTTTCA
ATTAAAATTTGAATTTAGGGAGGGAAGTTGTTAAATACTTCACTTTTTCC
TTCATGAGTTTATTTCAGGTCTGAAATCTCAGCAGACCCTTGTGAAGTCA
TTAAGAGTTTCAAATTACAAAGCAGCCTAGCACCTTCCACTGGTAACCTT
TTATTTGGACTTTAAGTATGTTAAAAGGTACACTTTAGGGATGTGAAGGT
TGTTAAAAGGTACAAAGATATTTTGGTTTATTGGATGTGTTAGCAGTGAT
CTATG

ATCAGATTNTNNTCCGCNCGAGTGTTTGGTGTGTGTAGTGATGTGTCAGA
TGTTCTCACCACCTATAGCGTTGTGCGCGTCGCACCCAGACGCGATGGCG
GTTGCCGACACAGGCAAGAAGTGCGACCGTGATGACGGGCCGACGNCGAT
ATACGGAGGTCGACTGTGTCACTCTCTCGAACTCTCAGACTATCTACAAC
AGTCAGCGCCGATACAGCGCTCGTGCATATATCGATACGCGCGACGACAC
CACTTACACTACGATCACGAGNGATTATAACGTACCATCTAGTCACTTCC
ACCTATCTAAGCATGGAGATGAANAGACGGCGGTGGCACGNTGCTACTAG
CTAGTGCATAGGACATGATACATAGCGCGTATCGCTATCCATAGTCAATA
CTATGAGCCCGGACTAGGCGATGGACACGCTACCTATAATATATATCAAC
GAGAGCCTCACTACATGGTGTGACTCATGCGCGGAGTGTATGTCTACGTC
TGCGCTCNAGGTACGCGCACATTCTTCGCGTACGTCCTGTGCCTGTCANG
CTGACGTCGCTATCCTCCGCTCACGACTCCTATACGTCCCCCGCCGAGCA
CGCGTATCCTACTATACTCATCGTCTCTGTTATATGTTTCTTATCGCGGC
GNCCNCATTGCGTCGCGCTAGTTACCGTAGTATGCGTCATATCGTTGCCG
TACATTCGTAGGTCTGCGTCGCGTCCGCGCCGTGGATACTGACTAGCGAT
CGTGTATGATGCGCGACTTTGCGACGCCACTGATAGCGATCTGATATCTA
GNACATATGCGCAGTCGNAGTACACACCTAGACGCACCGAGNCTGANTCA
TACGATATCATTTTAGATANTGAGCCAGTACCTCGTCGCCGTGACTAGTA
GTGTGCGANCTGGCACTAAACTCGTAGATATACGGTCTANTGCTATNGNG
ATCGATGTTTCNGTCGAAGCNAACGATACGGCAGCGACTTGAGANGATTA
ACGAGTAGTCACACCGATACGTGCGCTATGCAGTCTCACTGACTAGTCGT
GCGTACTCGTGACGCCAGTATCATTACGACTATGTATGATATAGCGCAGC
GNTGTGTGNTAGATATATTAACTCGCAATCGCACTCACTCTCANTNTATA
CGTGACGACATGCAGCAACGCACGAGTGCATATATGTAGATACGACGTAC
TATGATCATCAAGNCTCGTGTANCGCACCGCAGCGACGCGAGCGATCTTC
AGCGAGCTAGTTGATCTCGCGACTGTGACTTTNTACGCCGCGCGTATCGA
ACGCGCACAGTTGATATATGAGTAGTACGNCAGCTANGTGATCGCGTCCA
GTCCACGACATACGAGCCGTTACCTATTGCAGNACGCTCTGTATACGNTN
ACGTCANCAGAGCAATGATTANACGCAGCTAGNAACNACGAATGATANAN
NGTTAAACATGAACTAGCCACNTCGAGCACAAGTCGCATGGATGCACGTA
TCGATAGCGACGATACGTCGTGTCGTATTTACTGCATACTCTGACGCCGC
GTGACTGTGATACGACCACGTCTCGCACTCGTCCTCATCTATCNCGGTNG
TAGAGTGAATGTCTCGTCTGATGTAATAGTCACTAATGACTCTACTCTAC
CATCTCATCGACACGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_c20.b1 MSMg01no471_c20.b1 CHROMAT_FILE:
MSMg01no471_c20.b1 PHD_FILE: MSMg01no471_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:20 2005
         (655 letters)



>mm_chr10_35172195_35173249
          Length = 1055

 Score = 1093 bits (565), Expect = 0.0
 Identities = 631/653 (96%), Gaps = 4/653 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaactattaatgttttcatagttaacatgaacaagtaaaatcctcttttatgt 64
           ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 855 gaattccaaactagtaatgttttcatagttaacatgaaaaagcaaaatcctcttttatgt 796

                                                                       
Query: 65  tccaagtactctt-taaaaaaaaaacaatttaggtaatatattagtaacactcaagagca 123
           |||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 795 tccaagtactcttaaaaaaaaaaaacaatttaagtaatatattagtagcactcaagagc- 737

                                                                       
Query: 124 cc-gtatcttattattttgtaaatttaaattgtcgtttcacatcaagaaatatctacctg 182
           || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 736 cctgtatcttattattttgtaaatttaaattgccgtttcacatgaagaaatatctacctg 677

                                                                       
Query: 183 tttggaatggcaagaaaatattaaattcatctcctctaggttactctaggctatacattt 242
           ||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 676 tttggaatggcaagaaagtattaaattcatctcctctaggatattctagactatacattt 617

                                                                       
Query: 243 ttttctacttcaaaacaattttcattttataaactatgttataaaaattatgtggacatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttttctacttcaaaacaattttcattttataaactatgttataaaaattatgtggacatg 557

                                                                       
Query: 303 taaatctgtatacataatagtgactactgacattaataattcaaggatactcaacattag 362
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 556 taaatctgtatacctaatagtgactactgacattaataatttaaggatactcaacattag 497

                                                                       
Query: 363 aattagaaagaggaagaatgaagagttttattgagtgtccctctattgtttttaaaaaga 422
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 496 aattagaaaaaggaagaatgaagagttttattgtgtgtccctctattgtttttaaaaaga 437

                                                                       
Query: 423 taacatatctgtttgcaatacatattttcaattaaaatttgaatttagggagggaagttg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 taacatatctgtttgcaatacatattttcaattaaaatttgaatttagggagggaagttg 377

                                                                       
Query: 483 ttaaatacttcactttttccttcatgagtttatttcaggtctgaaatctcagcagaccct 542
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtaaatacttcacttttttcttcatgagtttatttcaggtctgaaatctcagcagaccct 317

                                                                       
Query: 543 tgtgaagtcattaagagtttcaaattacaaagcagcctagcaccttccactggtaacctt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtgaagtcattaagagtttcaaattacaaagcagcctagcaccttccactggtaacctt 257

                                                                
Query: 603 ttatttggactttaagtatgttaaaaggtacactttagggatgtgaaggttgt 655
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 256 ttatttggactttaagtatgttaaaaggtacac-ttagggatgtgaaggttgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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