BAC Information

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BAC

Clone NameMSMg01-473C13
Chromosome10 (Build37)
Map Location 84,095,606 - 84,096,069
singlet/doubletsinglet
Overlap genePolr3b
Upstream geneAppl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2
Downstream geneRfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473C13.T7 (MSMg01no473_c13.b1)MSMg01-473C13.TJ (MSMg01no473_c13.g1)
ACCAG555524AG555525
length7611,567
length of high quality
(start - end)
463 (78 - 540)---
definitionCHROMAT_FILE: MSMg01no473_c13.b1 PHD_FILE: MSMg01no473_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:05 2005CHROMAT_FILE: MSMg01no473_c13.g1 PHD_FILE: MSMg01no473_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAACAGCGCGG
AATTCTGCACTGGATTTCTTGATGGGTCCTATACATAGTTTTCCTAGATG
TTTATCCATATAGCAACGATTTTGGAAGAAGTTACTATCTCTTAGAACAA
GTTTGAAAATAATGGATAATATCAGCTAGTAACTTTGGAACCTGGTTTTT
CTAATTAAGGACAGATGTTGAGTCTTCTGTAGAAATAGCTGTGAATTTAA
AATGTTTTCTGTTTTGAGGCAAATCATGTGTACATAGATTTTCTTTTTAA
TTTGTTGGAGAATGTACCTTATTTACATTATTACACATACACACACACAC
CATTTACGTGCATAGAATATATATGCCTTAGATAGGGTTTCATTGCTGTG
GAGAGACAGCATGACCAAGGCAACTCTTATTAAGCACAACATTTAACTGG
GGCTGGCTTACTGGTGCTGAGGTTCAGTCCATTATTGTCACGGTGGGAAG
CATGACATTATCTAGGCAGGCACGGTGCTGGAAAGGAGCTGAGAGTTCTG
CATCTCAATCAGAAGGCAGCCAGGAGAAGACTGCATCCTTATGCAGTTAG
GAGGATGGCTCTCAAACTCACCCCCAACCCCCAGTGGATAACTTTCCTCC
AACTAGGGTAAAACTTATTTTTATATTGGCAACCTCTCCTATAATTGGCC
CTCCCCCGTGCCCAGGCCTATTTCCTTTCCCCCACATACGTATTTACAAA
ATATTTCCCGC
AAATTATGAATATAAGTATTAATATATATANNGGGGTCGGCTGGTGGTCT
CCCCTCGCAGAGTGAGAGGATGAGACTCGGATAAGGCGTGACACGCCGGT
CACATCCACCCAACAATACCAACCCGCACACAACGACCCGCGCACGAATA
TTTCTATGAGATTGTATAGTTCTGATAGTTGTATAGGATCGCACGCTTTA
TCTTCCTCTTATATAAGTCATATAGCATAATACATTAGTAGAGANAAGCA
GCAAAGACATAACTCAACTCGACATACGATATCTGTACGATAACGCATGT
CGTTGTTGCTAGTAGTTTGCATATTATCTAATAAATCTCTACATCATAAT
CACAACCACGCAGAGTATCAGTCAACCAACGGTCTTCTACTCTAAGTATA
TTATATATTTCCGATCGTCCATCGTACATATAAAGACACAGAACAAACAA
ACAAATACACAACAACACACAACATCAACGAACCACGACACCAACATGAC
TACANTAGAAACGCGAACAGACAGAGACGCATCGTGCATACATATANAAT
GCATGCTCATTGATGTCGAGNAGTGACGTAGATGAACATATTNGTTATAT
TAGACTAGTATCTATATAAATAATGTAATACAATTACCGTACTCCAATAT
TATACACTATGATTGCTCGCATCATACACACGTACGATCTTCATAATGCA
TCTGTGTTGTCGTGCGTCGTCGTGCAAGAGTATGTAGAGCAGGAAGAACA
TCACGACAGTGCTAACGAATTAAGTGGAGTGACAAAGATACTATACATAT
GCACACGACGCACAATGATAGACGATATAAGACGAGGCATAGAGCATGCT
GCGTGTGTCGACGTGCAATGTCACGCGAATCGCTACCACGAGTGCCGAGT
CTGCTCGCGCNCTGATCACCATCGTACCTGACATAGGCAACGCATGACGT
TGCNTAATAGTACGATGAGAGTAACTTGATTCGATCTGACTACTATTAGC
ATACGCGTGGGAGATGCCGANACATAATGTGCGGAANGACGTACGCGAGT
AGACGAGTAGTGCGTCACAGCGTGAATATATNGGATGCATAAGTAGGACA
CGCGNTATTAAGCACATAACCTCGTGCGTATCAAGATATATAACANATCC
ACACACAGAGAATATATCTACACATCATCTCTAGCCACTCTACACATAGA
CTGAGATTCAACCGTATNGTATCAGATATGACGTTCGACATGTACGATAT
CTCCATATATCAATCTGATAGGTGCGACCTACAGACCATGGGAGACGTTG
CGACTACACTGCAGAATGCGACGAATCTCTATATGAATTCTCATTACATA
TATGTCGCACGATGGACATACAGGACNTATTCGGCGCCGAGTTGCGTTGC
TCGTACTNCTGAATGCATGAGCACACGGTCCTGTAGATGTAACTGANTAT
GACTACTCGCATTATGTCACTGTATCTGCTAGATACTGATAGCGCTANTT
CATGTATGCTCTACAGTGAGTGCATCTGCAAGGCGCGAGACAGTAGATGA
CGACAGCGCGTCCGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_c13.b1 MSMg01no473_c13.b1 CHROMAT_FILE:
MSMg01no473_c13.b1 PHD_FILE: MSMg01no473_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:05 2005
         (463 letters)



>mm_chr10_84095406_84096269
          Length = 864

 Score =  843 bits (436), Expect = 0.0
 Identities = 457/464 (98%), Gaps = 1/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctatacatagttttcctagatgtttatccatatagcaacgattttggaagaagttacta 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cctatacatagttttcctagatgtttatccatatagcaacggttttggaagaagttacta 260

                                                                       
Query: 61  tctcttagaacaagtttgaaaataatggataatatcagctagtaactttggaacctggtt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tctcttagaacaagtttgaaaataatggataatattagctagtaactttggaacctggtt 320

                                                                       
Query: 121 tttctaattaaggacagatgttgagtcttctgtagaaatagctgtgaatttaaaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tttctaattaaggacagatgttgagtcttctgtagaaatagctatgaatttaaaatgttt 380

                                                                       
Query: 181 tctgttttgaggcaaatcatgtgtacatagattttctttttaatttgttggagaatgtac 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagttttgaggcaaatcatgtgtacatagattttctttttaatttgttggagaatgtac 440

                                                                       
Query: 241 cttatttacat-tattacacatacacacacacaccatttacgtgcatagaatatatatgc 299
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 cttatttacatctattacacatacacacacacaccatttacgtgcatagaatgtatatgc 500

                                                                       
Query: 300 cttagatagggtttcattgctgtggagagacagcatgaccaaggcaactcttattaagca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagatagggtttcattgctgtggagagacagcatgaccaaggcaactcttattaagca 560

                                                                       
Query: 360 caacatttaactggggctggcttactggtgctgaggttcagtccattattgtcacggtgg 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 caacatttaactggggctggcttactggtgctgaggttcagtccattattgtcatggtgg 620

                                                       
Query: 420 gaagcatgacattatctaggcaggcacggtgctggaaaggagct 463
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagcatgacattatctaggcaggcacggtgctggaaaggagct 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 864
Length adjustment: 10
Effective length of query: 453
Effective length of database: 854
Effective search space:   386862
Effective search space used:   386862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)