BAC Information

Click to search

BAC

Clone NameMSMg01-473O22
Chromosome10 (Build37)
Map Location 66,445,785 - 66,445,930
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473O22.T7 (MSMg01no473_o22.b1)MSMg01-473O22.TJ (MSMg01no473_o22.g1)
ACCAG556115AG556116
length766802
length of high quality
(start - end)
460 (51 - 510)146 (80 - 225)
definitionCHROMAT_FILE: MSMg01no473_o22.b1 PHD_FILE: MSMg01no473_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:12 2005CHROMAT_FILE: MSMg01no473_o22.g1 PHD_FILE: MSMg01no473_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAAAGATTTTCCATGGCTGAGAAACACTTTTTCAAAATG
TTCAACACTTTTAGCCATCAGGGAAACGCAAATCCAAACTACTCTGAGAT
TCCTCTTACACCTGTCAGAATGGCTAAGATCAATAACACAGGTGACAGCT
CATGCTGGCAAGGATGCAGGGGAAGAGGAACACTCATCCACTGCCACTGG
GACTGGAAACCTGTACAGCCACTATGGAAATCAGCACAGAGGTTCCTCAG
AAAGATTGGAATCCATCTACCACAGAGACACACTTGTTCAATGATGTTCC
CTTATGCTCTATTCATAATAGCCAGAAACTGGAAACAAACTAGATGTCTT
TCAACAGAAGAATAAAAGAAAATGTGGTATATTAGTAATGTATTACATTT
GCTGTTAAAACAATTAAATCTGCAGACAAATGAATGGAACTTGGCGGGGG
GGGGGGGGAACGACCACGTACGGTATCGAAGGGATTATCCTGAGGTAGTA
ACCCCCGTCCCGAAAGAAAAAAATGGGGGGATATTTTTCTTTAAATTGGC
ACCAATCCGGTGGCTCCTGGTACAACTTCACTATCCATCCTTCCCCCCAC
TTCCTTACTTTCTTTCCACTCCCTTTGTACCACCTCTCCCCCCTCATTTA
ATAATTATAATCTTCCCACTTTAATATTCCCACTTCTCACTTTTTCTCTT
CACTCACTCTTTCCCT
TAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCACCTTGTTAGACATGT
TCCTAAGCCAACAGCCAAGTGGTTCTTTTTGTTTGTTTGTTTGGTCTTTT
AATTTTGTTTTGGTTGGTCTTTTTGTGAGAGTGTGTGGTGGTTTGAATAT
ACTTGGCACATGGCAAGTACTATTACAAGGTGTGGCCTTCCTGGTGTGGG
CGTGGCCTTGTTGGACGAAGTGCCGCACTGTGTTAGGGTTTGAAAGCACT
TGGCGTACAATCCCCACCCACTGCAGGTTTTTTTTTCTTCCTGGATGACT
TACGAACAACATGTATTTTTTTTCTGCCGTCGTATGCCCTTTAATCCCAG
TACTCTTGATCGTCGATTTCATCTGTCACTCCTGATTTCCAGTCATAATT
AGTTTTATCATCTCATCTCCATTATCTCTCCGTCCCTTTCCAATCTTTCT
TACTCCTCCTTATACTATCTTCCTCTCCCCCCCTTGCCTTTCTCCCCTCT
CTTGACCTTTTTTCTACCTTCTTCACCAATTTTTCTCCTGCCTTAGCTCC
CCCTCATTATACTCCCCTTTTCACAATCAATATCCCTATACTCCTCTTAT
CATCTTCTTTACTATTATCTCTCCACTATTTCTAACTTTTCTCTTTCTCC
CCTACTCTTACCCTTATCCTTTTCTCTCCCCTCTATCTCTCTTCTACCTT
TATAAACATACTCTATTCAAACCCACTTACTCCTCTCTTTCTTCTTTGCC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_o22.g1 MSMg01no473_o22.g1 CHROMAT_FILE:
MSMg01no473_o22.g1 PHD_FILE: MSMg01no473_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:12 2005
         (146 letters)



>mm_chr10_66445585_66446130
          Length = 546

 Score =  267 bits (138), Expect = 2e-76
 Identities = 144/146 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaccaccttgttagacatgttcctaagccaacagccaagtggttctttttgtttgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaccaccttgttagacatgttcctaagccaacagccaagtggttctttttgtttgtttg 260

                                                                       
Query: 61  tttggtcttttaattttgttttggttggtctttttgtgagagtgtgtggtggtttgaata 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tttggtcttttaattttgttttggttgatctttttgtgagagtgtgtggtggtttgaata 320

                                     
Query: 121 tacttggcacatggcaagtactatta 146
           |||||||||||||| |||||||||||
Sbjct: 321 tacttggcacatgggaagtactatta 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)