BAC Information

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BAC

Clone NameMSMg01-473P19
Chromosome10 (Build37)
Map Location 6,489,642 - 6,489,909
singlet/doubletsinglet
Overlap genenone
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473P19.T7 (MSMg01no473_p19.b1)MSMg01-473P19.TJ (MSMg01no473_p19.g1)
ACCAG556156AG556157
length755757
length of high quality
(start - end)
249 (75 - 323)599 (77 - 675)
definitionCHROMAT_FILE: MSMg01no473_p19.b1 PHD_FILE: MSMg01no473_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:16 2005CHROMAT_FILE: MSMg01no473_p19.g1 PHD_FILE: MSMg01no473_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCATCTGTTTCGGATGGCCACTTACACCTCACCATGAGGGTC
TGGTTTACTGCTTGGATCCTGCTATGTTTCAGACACTCAATCCCTGCACA
GGTTACCTGTTCACTGGGAGAGAGTTCTAAGTTGGTGGTTTTCTTTATTT
ACTTTTTGTTGTTGTTGTTTTGTTTTTTTCATACTGAAAAACTGTGTGTG
AGTGTGTGTGTGTGTGTGTGTAGACACACCAGTGCCATGGTGTATACGTA
GAGATCAGATAGAAACCTTTGAGATATTTTTCATTCTTTCTACCTTCTTG
ATACCAGGCGTTGAATTGATCCTACACGGCTTTGTACCAAGGACCTTTAC
CTGCAAAGCCGTTCAGGCCCTTTTGTGTATGTTTGTGTACAACTGTATGT
GTGTGCATACATACGTGTTCACATGTGCATGTGAGCGTGTTGAGTAAGAG
GTGGGTTTTGACTGTTTCCCTCTATTGAGATCCACCTGATTTTTTTGAGT
CAGGGTCTCTTACTCAACCTGTAGTCCATTGTTTCAGATAGATCCGCTAG
CATGATAACTCTATGGCTGTTTCTGTCTCCATGTTCCCAGTGTTACGATT
ATCACTGCTTTATGTTTTTTTTTTCTTTAGAAGCTGGATATTCTAACTTC
TGTCATTATATTTGTCCAGCTAGTAATTCAATGACTCTTGTTCTCCCCAC
CCCTG
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTCCATACCTAAACATGATAA
AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG
CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC
TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTTGAC
AACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGATGAAGTCAAAATA
TCACTATTTGCAGATGATATGATACTATATATAAGTGACCCTAAAAATTC
CACCAGAGAACTCCTAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGAT
ATAAAATTAACTCAAACAAGTCTTTCTCTACACAAAGAATAAACAGGCTG
AGAAAGAAATTAGGGAAACAACACCTTCTTAATAGTCACAAACAATATAA
AATATCTTGGCATGATTCTAACTAAGGACGTGAAAGATCTGTATGATAAG
AACTTCAAGTCTCTGACGAAAGAAATTAAAGAAGATCTCAGAAGATGGAA
AGATCTCCCATGCTCATGGATTGGCAGAATCAACATTGTAAAAATGGCTA
TCTTGCCAAAAGCAATCTACAGATTCAATGCTATCCCCATCAAAATTCCA
ACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAA
TAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_p19.b1 MSMg01no473_p19.b1 CHROMAT_FILE:
MSMg01no473_p19.b1 PHD_FILE: MSMg01no473_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:16 2005
         (249 letters)



>mm_chr10_6489442_6490091
          Length = 650

 Score =  414 bits (214), Expect = e-120
 Identities = 246/268 (91%), Gaps = 19/268 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccacttacacctcaccatgagggtctggtttactgcttggatcctgctatgtttcagac 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gccacttacacctcaccatgagggtctggtttactgcttgaatcctgctatgtttcagac 260

                                                                       
Query: 61  actcaatccctgcacaggttacctgttcactgggagagagttctaagttggtggttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaatccctgcacaggttacctgttcactgggagagagttctaagttggtggttttct 320

                                                                       
Query: 121 ttatttactttttgtt-gttgttgttttgtttttttcatactgaaaaactgtgtgtgagt 179
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttactttttttttgttgttgttttgtttttttcatactgaaaaactgtgtgtgagt 380

                                                                       
Query: 180 gtgtgtgtg------------------tgtgtgtgtagacacaccagtgccatggtgtat 221
           |||||||||                  |||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtagacacaccagtgccatggtgtat 440

                                       
Query: 222 acgtagagatcagatagaaacctttgag 249
           ||||||| ||||||||||||||||||||
Sbjct: 441 acgtagaaatcagatagaaacctttgag 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)