BAC Information

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BAC

Clone NameMSMg01-476A10
Chromosome10 (Build37)
Map Location 13,459,103 - 13,459,343
singlet/doubletsinglet
Overlap geneAig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A10.T7 (MSMg01no476_a10.b1)MSMg01-476A10.TJ (MSMg01no476_a10.g1)
ACCAG557714AG557715
length759780
length of high quality
(start - end)
99 (91 - 189)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no476_a10.b1 PHD_FILE: MSMg01no476_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:00 2005CHROMAT_FILE: MSMg01no476_a10.g1 PHD_FILE: MSMg01no476_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAATAATTTGGGGGGGNAAAAAGAAGTACNTTTTCAAAACGGATGCGN
GGAAANCTTGCCTTTCTTGCACTGATAACATGNCTTCCCAGGACAGTCGT
TGTTGTCCCTGACAAGGTTCACAGCTGGTCAAGGAAAGTGCTGATTTCTC
TTCTCTTCTGTGTCTTGTGCCTTTCGGCACCATAAAGGCTGAGCAGGAGG
GACAAAACTTCCAAGTCATCACCGTCTTGACTTCTCTGTGTTCTAAAACT
CAAGTATGTGGCTTGTCTTCAGGAGTTGGATCTTAACATCAAGTTCTAGG
GAATAACCACAGACTATTTTTTTTTTTCTATAACATTTGTGTAGGAGGCA
CCATGGGACCTATCTGGCCATCAACACCCAAAGACATATTCTATTTCTGT
GCCCACCAATTCTACTTACTAGCCCATGCTGTTCAGTCAAGACTTGACTG
CCTCATTATAGCCACACTTTTCTCCATAGATTCTTATGTGTATATATATG
TATACCCTTTTCGTTTCCTTTCACCGTATCTGCCCCCCACGCACTTTTAT
AATTGTCTTTATCGCCCGTTATCCGTTCTTCGAATCTCTCTCCTCTTTCT
CCCTTTTTTACTCCTTCCTTTCACTTAACCCTCTTTTATCCTATTAATCT
TTCACTCACTTTTCCCCCCTTTCTTTTTCCCCCCTTTTTTCTTTTCTCCC
CCTTTTTCCTCTTTATTATTTTCCCTGCATTTTCCCCTTTTTGCTTATCT
GCGTCACTC
NCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTACAGACGCAATCATTAGAGACACTGAAACTCAAAG
CATGGTATCATTAATGCTAGGCAGTGTACCAAACAGGAAAACTCTTGCTT
TTGGGGGCCAGGCAGAGAGGTGGAGTTTTAGTGGCAGCATTTATTGGTCA
CATGGTTACAGCAAGTCACTTCACTGGTTGGAGCCGAAATGTCTTTAGAA
AGATATGCAAAGATAGTAACTGTCTGTCCTTCAAAGAGGCATGATGATCG
TCCCAGTGAAAACACGAATTGCGTACCTTGGCTCAGTGCACAGCACCCAC
TGGGGTTGCGCGGAAGTAAGTGTGATTTAGCTAGCGCTGCTCGTTTTGCT
TACCGCTGGAAGAGGAGACCAGATAAGCAGATGGCCCCATGATACAAGGA
CTCAAGCCTACTGTTGTAGAGGTTGTAAAAGTGAACGTGTACCCCCATGG
CTGCCAGTTTGTCTCTTCTTCAGACAAGCTCCACACACACTGTTACTGCC
TTCCTAGGCGCTTTTCCCTCTTTTACCCGTTGTGTTGCTCCCCCATGTTG
CTTTTCTTCTCCCTTTTCACTTCTTGCCCTTTCTCGCCACCCCCCCCTAC
TCTTTGCCCCCCTTTTTCCTTTTTTCTTTACGGATACCGCTTTGTTCTTT
CCCTCTGTTCTCTTTGCTCCCCCCTCCCCTTTTCGCTCTTATTCCGACTC
CGCGCCCTTTTTTCCGCCTTTCCCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a10.g1 MSMg01no476_a10.g1 CHROMAT_FILE:
MSMg01no476_a10.g1 PHD_FILE: MSMg01no476_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:00 2005
         (245 letters)



>mm_chr10_13458903_13459547
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagagacactgaaactcaaagcatggtatcattaatgctaggcagtgtaccaaacagg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attagagacactgaaactcaaagcaaggtatcattaatgctaggcagtgtaccaaacagg 260

                                                                       
Query: 61  aaaactcttgcttttgggggccaggcagagaggtggagttttagtggcagcatttattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactcttgcttttgggggccaggcagagaggtggagttttagtggcagcatttattgg 320

                                                                       
Query: 121 tcacatggttacagcaagtcacttcactggttggagccgaaatgtctttagaaagatatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 321 tcacatggttacagcaagtcacttcactggttggagccgaaatgtctttagaaagagaag 380

                                                                       
Query: 181 caaagatagtaactgtctgtccttcaaagaggcatgatgatcgtcccagtgaaaacacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagatagtaactgtctgtccttcaaagaggcatgatgatcgtcccagtgaaaacacga 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)