BAC Information

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BAC

Clone NameMSMg01-476C08
Chromosome10 (Build37)
Map Location 35,679,303 - 35,679,480
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041585
Downstream geneLOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C08.T7 (MSMg01no476_c08.b1)MSMg01-476C08.TJ (MSMg01no476_c08.g1)
ACCAG557806AG557807
length770772
length of high quality
(start - end)
178 (123 - 300)170 (76 - 245)
definitionCHROMAT_FILE: MSMg01no476_c08.b1 PHD_FILE: MSMg01no476_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:09 2005CHROMAT_FILE: MSMg01no476_c08.g1 PHD_FILE: MSMg01no476_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCCACTGTTTGCCAAACAGAACTCATAATGATTACCTCAAGCAAA
GCATTAAACAAACAAACAAGCAAACAAAACCTTCGAGTGGGTTAGGAAAT
AACACAAGCTGGTGAAATAGACTATCAAGTTTTTAGTTTGAAGAAATAAA
AGCAGACAAAATAGCTAAAACTTGAAGGGGAAAATACAAATGAAAATATA
AGAAAACAATTTAAAGAACATGTGGCAACCAGAAAAAAATACTAGGCAAC
AGAGACCTCAGAGGGCACAGGTGTATTATGAAATATATAGACTTCAACCA
TCCAAAACAGTTGTCTTTTTAAAAGTATTTATTTTAGATTTTAAGATTAA
TATTTATATTATTTTTTCATTTCCCTTTCTCATCCTCATTCATTTATACA
TATATATCTTGCTCCCTTTCAAATCCATGGCTTCTGTTTTATCTTAACGT
TTGCACACTTGTGTGTGCGTATATGTGTGCGTGCGCGCGCGCGTGTGTGT
TTTCTTTCTATTCCTCCCTTTTCTTTCTCTTTCTCTTTTTCTCTTTTTCA
CTTTCTTTTCTCTCTTCCCTTCCCCTTTCCCCCTCCTTCCCCTTTTTTTC
TTTTCCACCTCTTTTTCCCCCTTTTTCTTTTTCCCCCCTTTTTTTTTTTC
CCCCCCCCTTTTTCTCTCCTTCCTTTTTTTCCATCCCTTTCTCGCCTCTT
CTCCTTTCCTCTCTCTTATG
CTCGATGAAGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTACCATGGTTACTAAATCATTAA
TCTGTATCAACTATGCTACTAGCACAGAAGTTTATGAATTGCACATATAA
AACTACACCAGGGGGCTGGGAGAGATGGCTCAGTGGGTCAGAGCACTGAC
TGCTCTTCTGAAGGTCCTGAGTTCAAATTCCAGTATCCACATGGTGGCTC
ACAACCTTCCATAACGAGATCTGACACCCTCTTCTGGAGTGTCTGAAGAC
AGCTACAGTGCACTCACATATATTATAATTTTAAATCTTTTTTAAAAAAC
TACACCAAATATGTATTTTATTGCACAAAAGCTTAAGGTAATGAGAGAAG
AGGCTAAAATTCGGTCATTGTGGACAAAGTCGGCCATACTGAATTTATGT
CTCCGAATTTTATCATTCAGTAGCTCCCCCACAATTCATCTAGCTATTTT
TCAGACTCTTTCATTGTTGAGCCTAATCATTTCCCCCGTTTATTCTTTTC
CCGCCATCTTGCACTCTTTTGCACGATTATACCACTCCCCTTTGATCCTC
ATCTTCTCCCTGACGTGATAACCCTTTGCCCCGCCGCACTCTCCTTTTTT
GCCGCTTTTCCTCCTATTTTTCGTTTTTCCATGATCTTATTAACAACTCA
TTACACTTTCCCCCCTCCCCGTCACTCTCTTTTCTCTGCCTCCCCCCTCG
TTTATTCCTCTTTGTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c08.b1 MSMg01no476_c08.b1 CHROMAT_FILE:
MSMg01no476_c08.b1 PHD_FILE: MSMg01no476_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:09 2005
         (178 letters)



>mm_chr10_35679103_35679680
          Length = 578

 Score =  329 bits (170), Expect = 7e-95
 Identities = 176/178 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaaaccttcgagtgggttaggaaataacacaagctggtgaaatagactatcaagttt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaaaccttcgagtggggtaggaaataacacaagctggtgaaatagactatcaagttt 260

                                                                       
Query: 61  ttagtttgaagaaataaaagcagacaaaatagctaaaacttgaaggggaaaatacaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ttagtttgaagaaataaaagcagacaaaatagctaaaacttgaaggggaaaatacaaata 320

                                                                     
Query: 121 aaaatataagaaaacaatttaaagaacatgtggcaaccagaaaaaaatactaggcaac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatataagaaaacaatttaaagaacatgtggcaaccagaaaaaaatactaggcaac 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)