BAC Information

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BAC

Clone NameMSMg01-479F05
Chromosome10 (Build37)
Map Location 4,811,574 - 4,812,101
singlet/doubletsinglet
Overlap geneSyne1
Upstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479F05.T7 (MSMg01no479_f05.b1)MSMg01-479F05.TJ (MSMg01no479_f05.g1)
ACCAG560233AG560234
length765758
length of high quality
(start - end)
539 (48 - 586)639 (79 - 717)
definitionCHROMAT_FILE: MSMg01no479_f05.b1 PHD_FILE: MSMg01no479_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:17 2005CHROMAT_FILE: MSMg01no479_f05.g1 PHD_FILE: MSMg01no479_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGTATTCACTCTTTTTAATGTGAGTGGAGACCAGTGTTTAC
TAAACATGAAAGATTAATATCAGAAGAGGAAGGAATTGTTTTTAATCCAA
AAGGTCACTGTGAACAATAGGGGAGGAAAATAAAAAAAAGCACACACACA
CACACACACACAAGTTATGATAGAAACCACTTTTAAAACAGTTAGGCAAA
CTTCACTACACCCAAATACTCTCATACATAGACCAAAGCCATACATGGAT
CATCAGATGCAGAATATGCCTCAGATGTCAGCAACTTCTTTTATGTTTCT
GTTTATTTGTTTGAGAAAACAGAACCACAATGTTGGCCTAGCTTCAGCCT
TTTTTGCATGTCTTCTGTCTATATTTCTACCATAATTTCTCAACTATCTA
AAATAAAATAGTGCATGTTTAATTAAATAACTACATATAGTATTTGCTTA
AACTACGGGCTATCATTCAAAGAATGGGAAAAAGATATTTTTGTATTTAG
ATGTGAATATGCATAAGAAAAAGATGTTTAATTCTTCATCAACCCCAGCC
TGAAAGAAAAAAGGAGATAATACGCTGGGTGTAAATTTTATTGTTTTTAA
GTTTCATAAAGCAAACAAAGGATCTAACATAAGAAACTGAAAGTCTTTTT
TTTTCTCTTTATAGCTAGCTGATCCTTTATATTATGCATTTTTTTGAAAA
TCTAAAGTCTATGGG
NTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGAAATCCAGTGAGGTTAC
CTATTCAGTAACATTCAAATTTACTTCTAGTAGAGATGGTGAAACTAATT
AGGCATTACAAAGAACCGAGCTAGAATAGCTCAGGGCTAGTCTGCAGAGT
GATTACTTAGGACAGTAGCCAGTCTCACCCAAACAAGGGAATTCACAATG
GCCTAGCTAATAGGTGGGTTTACCAGGTAAGAGTTAGGGAATCCTACTGA
GACTGGAATCTTCACTACAGCCAGGTATAGCAGGCTATATTGCATATTAG
AAGCAAGTTGGTGAATTCTTCTGACAAATGGAGATTCTCCACAGATACTT
AAAAGAACAGCCAAGTTACACTCATACAAGAATTTATCAAGGCCTAGGAA
GTAGGAGGTTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAG
AACCCCCTAGTGCTAGCTTTCACAAGGCTCAAAGGAGTAGCACAAATTGT
GACTAGGGTGTGAAATCCTCACCTGCCATTAGCTGACTCTAGGCAGGGCT
GTCTTATTTTACTGTAAACATTACCTGGTTCCTGTAAGTCTTCTTGAAGT
CATTCCTCTGTTTTGTGTCAGATAACTGCAATGTACTTTGTCTACTGTGA
CATCCTACCCCTTTGTTTTCTGTATTATATAAGATTGGTGTTCACTTTGT
GACAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_f05.b1 MSMg01no479_f05.b1 CHROMAT_FILE:
MSMg01no479_f05.b1 PHD_FILE: MSMg01no479_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:17 2005
         (539 letters)



>mm_chr10_4811209_4812147
          Length = 939

 Score =  949 bits (491), Expect = 0.0
 Identities = 522/537 (97%), Gaps = 11/537 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggt--attcactctttttaatgtgagtggagaccagtgtttactaaacatga 62
           |||||||||||  ||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 893 gaattcaaggtaaat--actctttttaatgtgagtggacaccagtgtttactaaacatga 836

                                                                       
Query: 63  aagattaatatcagaagaggaaggaattgtttttaatccaaaaggtcactgtgaacaata 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aagattaatatcagaagaggaaggaattgtttttaatccaaaaggtcactgtgaacaata 776

                                                                       
Query: 123 ggggaggaaaataaaaaaaagcacacacacacacacacacacaagttatgatagaaacca 182
           |||||||||||| ||||||||      |||||||||||||||||||||||||||||||||
Sbjct: 775 ggggaggaaaat-aaaaaaag------cacacacacacacacaagttatgatagaaacca 723

                                                                       
Query: 183 cttttaaaacagttaggcaaacttcactacacccaaatactctcatacatagaccaaagc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 722 cttttaaaacagttaggcaaacttcactacacccaaatactctcatacatagaccaaggc 663

                                                                       
Query: 243 catacatggatcatcagatgcagaatatgcctcagatgtcagcaacttcttttatgtttc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 catacatggatcatcagatgcagaatatgcctcagatgtcagcaacttcttttatgtttc 603

                                                                       
Query: 303 tgtttatttgtttgagaaaacagaaccacaatgttggcctagcttcagccttttttgcat 362
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgtttatatgtttgagaaaacagaaccacaatgttggcctagcttcagccttttttgcat 543

                                                                       
Query: 363 gtcttctgtctatatttctaccataatttctcaactatctaaaataaaatagtgcatgtt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtcttctgtctatatttctaccataatttctcaactatctaaaataaaatagtgcatgtt 483

                                                                       
Query: 423 taattaaataactacatatagtatttgcttaaactacgggctatcattcaaagaatggga 482
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 482 taattaaataactacatatagtatttgcttaaactatgggctatcattcaaagaatggga 423

                                                                    
Query: 483 aaaagatatttttgtatttagatgtgaatatgcataagaaaaagatgtttaattctt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaaagatatttttgtatttagatgtgaatatgcataagaaaaagatgtttaattctt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)