BAC Information

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BAC

Clone NameMSMg01-479F16
Chromosome10 (Build37)
Map Location 127,479,836 - 127,662,432
singlet/doubletdoublet
Overlap geneNaca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4
Upstream geneMettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077
Downstream geneMip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479F16.T7 (MSMg01no479_f16.b1)MSMg01-479F16.TJ (MSMg01no479_f16.g1)
ACCAG560255AG560256
length775763
length of high quality
(start - end)		629 (69 - 697)640 (71 - 710)
definitionCHROMAT_FILE: MSMg01no479_f16.b1 PHD_FILE: MSMg01no479_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:19 2005CHROMAT_FILE: MSMg01no479_f16.g1 PHD_FILE: MSMg01no479_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,479,836 - 127,480,464)(127,661,793 - 127,662,432)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAACTTCACCCCCAAAAAGGTCCCCCAAAACTGCAGCCCCCAAA
GAGACTCTAGCCACATCTTCTGAAGGGGTTACAGCTGTGCCATCTGAGAT
TTCTCCTTCACCCCCAACTCCAGCCTCCAAAGGGGTTCCTGTGACCCTAA
CTCCCAAAGGTGCCCCTAATGCCCTAGCTGAGAGTCCTGCCTCCCCTAAA
AAGGTCCCTAAAACTGCAGCCCCTGAAGAAACCTCAACAACCCCATCCCC
CCAAAAAATTCCCAAAGTGGTTTGTCCCAAAGAGGCTTCAGCAACCCCAC
CTTCAAAAAAGACCCCCAAAACTGCAGTCCCCAAAGAAACTTCAGCACCT
TCTGAGGGGGTCACAGCTGTACCACTGGAAATTCCTCCCTCCCCCAGAAA
GGCCCCTAAAACTGCAACTCCCAAAGAAACTCCAGCCCCGTCTCCTGAAG
GGGCCACCACTGCACCAGTGCAGATTCCTCCCTCCCCCAGGAAGGGCTCT
AAGAAAGCAGGCTCCAAAGAAACACCCACAACCCCATCTCCTGAAGGGGT
AACAGCTGCACCTCTAGAAATTCCCATATCTTCCAAAAAGACTTCCAAAA
TGGCAAGTCCTAAAGAAACGCTAGTAACCCCATCTTCCAAAAAGCTCTCC
CAAACTGTAAGTCCCAAAGAAACTTCACTTGGAGGGGCCACAGCTGTGCC
ACTGGAGATAACTCCTTCTCACAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACACGCGAAATTCTTTAGTTCCCTGGGATTAGGGGGCCTTC
TCCCATTGGCTGGTTTGGACTGGAATCTGTGGACCCTGCAGCTCTGGAAC
TGAATAGTTCTGCTGTGTCTGGCTTTCTCAGAGCCCCGGAGTTCCCTACC
CCCTGGCCATGCCAGCGTCTCCCTTTCCAAACCATCAGCCTGCCCTTTTA
AACCAGGGGGTGGGGAAACATGATCTGAAAGTGGGGTTGGGGTCCCAGAA
GGAGGAAACGTTTTTCTTTTTCCCACTTTCTTGCCACGCTGTGCCTTTTC
CTAACCCATGTGAGGTAGCAGGAGGTGGTGGATGAGAAGAAACAGTCACT
TGGCAAAACAGCTCAGTCAGTTCTCCAGGACAGCTGAGAGCAAGACTGGA
GTGCCCACCCTCAACCCAGACGCAGAAGAATCTGGGTCAAGGGGAAAGAG
GTTCAGCTCTGTTCAGCTTCAGAGAGGGACATGGGGCCTAGGAGAGCGGG
GCTGTGTGAGTAGAGAAGGAAAAATGGGGTTCCGAGACAGACTCCTCCAC
CTGGGAAGTCATACAGGTCAGCAGAGCTTTTCATGTGAAGCCCTGGAGCA
GACCCTGTAGGGATGGCTCAGCCAGTGCCTCTCCTCCAGTGGGGAGTGAG
AAGGAACACATTAGGGAGTTGTGTTTCCTGTCTGCCACGTGCAACTTTGT
GGTTGGATGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_f16.b1 MSMg01no479_f16.b1 CHROMAT_FILE:
MSMg01no479_f16.b1 PHD_FILE: MSMg01no479_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:19 2005
         (629 letters)



>mm_chr10_127479636_127480664
          Length = 1029

 Score = 1170 bits (605), Expect = 0.0
 Identities = 623/629 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaaggtcccccaaaactgcagcccccaaagagactctagccacatcttctgaagggg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caaaaaggtcccccaaaactgcagcccccaaagagactccagccacatcttctgaagggg 260

                                                                       
Query: 61  ttacagctgtgccatctgagatttctccttcacccccaactccagcctccaaaggggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacagctgtgccatctgagatttctccttcacccccaactccagcctccaaaggggttc 320

                                                                       
Query: 121 ctgtgaccctaactcccaaaggtgcccctaatgccctagctgagagtcctgcctccccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgaccctaactcccaaaggtgcccctaatgccctagctgagagtcctgcctccccta 380

                                                                       
Query: 181 aaaaggtccctaaaactgcagcccctgaagaaacctcaacaaccccatccccccaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggtccctaaaactgcagcccctgaagaaacctcaacaaccccatccccccaaaaaa 440

                                                                       
Query: 241 ttcccaaagtggtttgtcccaaagaggcttcagcaaccccaccttcaaaaaagaccccca 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccaaagtggcaggtcccaaagaggcttcagcaaccccaccttcaaaaaagaccccca 500

                                                                       
Query: 301 aaactgcagtccccaaagaaacttcagcaccttctgagggggtcacagctgtaccactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactgcagtccccaaagaaacttcagcaccttctgagggggtcacagctgtaccactgg 560

                                                                       
Query: 361 aaattcctccctcccccagaaaggcccctaaaactgcaactcccaaagaaactccagccc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aaattcctccctcccccagaaaggcccctaaaactgcagctcccaaagaaactccagccc 620

                                                                       
Query: 421 cgtctcctgaaggggccaccactgcaccagtgcagattcctccctcccccaggaagggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtctcctgaaggggccaccactgcaccagtgcagattcctccctcccccaggaagggct 680

                                                                       
Query: 481 ctaagaaagcaggctccaaagaaacacccacaaccccatctcctgaaggggtaacagctg 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 ctaagaaagcaggctccaaagaaacacctacaaccccatctcctgaaggggtaacagctg 740

                                                                       
Query: 541 cacctctagaaattcccatatcttccaaaaagacttccaaaatggcaagtcctaaagaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacctctagaaattcccatatcttccaaaaagacttccaaaatggcaagtcctaaagaaa 800

                                        
Query: 601 cgctagtaaccccatcttccaaaaagctc 629
           |||||||||||||||||||||||||||||
Sbjct: 801 cgctagtaaccccatcttccaaaaagctc 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no479_f16.g1 MSMg01no479_f16.g1 CHROMAT_FILE:
MSMg01no479_f16.g1 PHD_FILE: MSMg01no479_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:19 2005
         (640 letters)



>mm_chr10_127661593_127662632
          Length = 1040

 Score = 1191 bits (616), Expect = 0.0
 Identities = 634/640 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttagttccctgggattagggggccttctcccattggctggtttggactggaatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tctttagttccctgggattagggggccttctcccattggctggtttggactggaatctgt 781

                                                                       
Query: 61  ggaccctgcagctctggaactgaatagttctgctgtgtctggctttctcagagccccgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggaccctgcagctctggaactgaatagttctgctgtgtctggctttctcagagccccgga 721

                                                                       
Query: 121 gttccctaccccctggccatgccagcgtctccctttccaaaccatcagcctgccctttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gttccctaccccctggccatgccagcgtctccctttccaaaccatcagcctgccctttta 661

                                                                       
Query: 181 aaccagggggtggggaaacatgatctgaaagtggggttggggtcccagaaggaggaaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaccagggggtggggaaacatgatctgaaagtggggttggggtcccagaaggaggaaacg 601

                                                                       
Query: 241 tttttctttttcccactttcttgccacgctgtgccttttcctaacccatgtgaggtagca 300
           |  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tggtccgttttcccactttcttgccacgctgtgccttttcctaacccatgtgaggtagca 541

                                                                       
Query: 301 ggaggtggtggatgagaagaaacagtcacttggcaaaacagctcagtcagttctccagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaggtggtggatgagaagaaacagtcacttggcaaaacagctcagtcagttctccagga 481

                                                                       
Query: 361 cagctgagagcaagactggagtgcccaccctcaacccagacgcagaagaatctgggtcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagctgagagcaagactggagtgcccaccctcaacccagacgcagaagaatctgggtcaa 421

                                                                       
Query: 421 ggggaaagaggttcagctctgttcagcttcagagagggacatggggcctaggagagcggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggggaaagaggttcagctctgttcagcttcagagagggacatggggcctaggagagcggg 361

                                                                       
Query: 481 gctgtgtgagtagagaaggaaaaatggggttccgagacagactcctccacctgggaagtc 540
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gctctgtgaatagagaaggaaaaatggggttccgagacagactcctccacctgggaagtc 301

                                                                       
Query: 541 atacaggtcagcagagcttttcatgtgaagccctggagcagaccctgtagggatggctca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atacaggtcagcagagcttttcatgtgaagccctggagcagaccctgtagggatggctca 241

                                                   
Query: 601 gccagtgcctctcctccagtggggagtgagaaggaacaca 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gccagtgcctctcctccagtggggagtgagaaggaacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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