BAC Information

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BAC

Clone NameMSMg01-481I15
Chromosome10 (Build37)
Map Location 19,189,817 - 19,190,339
singlet/doubletsinglet
Overlap genenone
Upstream geneNhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
Downstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481I15.T7 (MSMg01no481_i15.b1)MSMg01-481I15.TJ (MSMg01no481_i15.g1)
ACCAG561921AG561922
length734766
length of high quality
(start - end)
655 (73 - 727)657 (71 - 727)
definitionCHROMAT_FILE: MSMg01no481_i15.b1 PHD_FILE: MSMg01no481_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:12 2005CHROMAT_FILE: MSMg01no481_i15.g1 PHD_FILE: MSMg01no481_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCAGAGATATTTCCGACAGAGAGTTAGAGTGATCTCAGGAAGAAAGGG
TATGGATAGAAAAAATAGGAATTGATATATAATTTAGGAATAAATAGTAT
TAGAATGAGAGTATGTGAGGCCATGGCATTGCTGCGGTAAGAAAATGAAG
ATTAGAGACTTAAAAGATGATGTAGACGCATATAAAAAGTCAGTGCTCTG
TTATTCTAGCTGATTGATGAATTGAAGATATCAATGCCTGGAAAGACATT
AGAGAGAGCTAACTGTTGTATTGTTTTACTGTATTACTTACATAAATTCA
AAACTTTGTAAGGAATCAATTTAATTTTAGTTGTCTGTCATTTTTCTATT
CTTACATGAAAGAAGTTACTAAAAGCTGCTGTCTGCTGTACCAAAAAACT
GGAAGAGCTGTGCCCAGCTGCCTGTAAAGAATAGGCTGTGCAAACCTATA
AGGAAATGTGGTTTTGCTTTGTGCTTGGTTCTGCTTTAAGGAAACAGGGA
GCTGGGACTATTGATCTGGGACTCATAGAGCTTATGCAAATTTAAGAATT
CTTGATAATTATTAACAAGTATCAAAGTCTTGATAATGTAGCTTTAGTAA
ATAAAAGACTGGGTTCAGGCTCTTTGGCGGGAGAAAGGCAGTGGCATGAG
AGGGGAAAGGAATTGAGCTGAAGCTGAAAAATAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAGTCTTTTCTTGAGGCAGATGCTGTAGA
AACAGGAGACAAATGGGGTAGAGCTCTTAAGGCACAGGTGAGTGAGCTCT
GTAGGTCCAAGTGGCTTAGGAGCGACTGCTATAGGCCAAGGATACTCCTC
AACCAGCTCTAAGGAAATGGGGTGCTGAAGGGGTGCTAAGACCCCAGACA
TTCCTTATCATCCAGAGAGAGCCTCCGGGCTCTGAGTCAGTTGGAAAGAA
CAAACTCTGAGCTCACCAGGTTTCAGTCACGGGTGAGGATAGCAAGCAAA
GACCAGGAATCCTAGGGTGCCACAGCAAGACCAATGTAGGAACAACACTA
AGGCTGGCAAAGGCCATGGCTCCGTGAAATTAAGAAATTGTCCAAGACAT
GGGCACAGCAGAGAGAACAAACAGTGGATGCCTGTGGCGATTTCAGGAAG
CTCGCCCCATCCCTTTAGCTAAGAGAATGCAAAGAAGAAAATCAGAGGCT
GTGGAGAGCTAGAACAGTGGCAGCCTGCGGTTAAGAGGCACACAGCTGAG
GCAGAGGCATCAAAACTGGAAGAGAATCAGAGGGATTCCCCAACTTTCAC
CTTCCAAATGCCAATCTCCTGCTGGTACCCCTATGAGACTGAACCAAGAG
CCATAGTCCTGATGCCAGCAGGAAGCCTGGGAGGCAAGCCTGGCAACTCA
GCCCTCAGGGACACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_i15.g1 MSMg01no481_i15.g1 CHROMAT_FILE:
MSMg01no481_i15.g1 PHD_FILE: MSMg01no481_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:12 2005
         (657 letters)



>mm_chr10_19189617_19190673
          Length = 1057

 Score =  980 bits (507), Expect = 0.0
 Identities = 519/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtcttttcttgaggcagatgctgtagaaacaggagacaaatggggtagagctcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtcttttcttgaggcagatgctgtagaaacaggagacaaatggggtagagctcttaa 260

                                                                       
Query: 61  ggcacaggtgagtgagctctgtaggtccaagtggcttaggagcgactgctataggccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcacaggtgagtgagctctgtaggtccaagtggcttaggagcgactgctataggccaag 320

                                                                       
Query: 121 gatactcctcaaccagctctaaggaaatggggtgctgaaggggtgctaagaccccagaca 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gatactcctcaaccagctctaaggaaatggggtgctgaaggagtgctaagaccccagaca 380

                                                                       
Query: 181 ttccttatcatccagagagagcctccgggctctgagtcagttggaaagaacaaactctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccttatcatccagagagagcctccgggctctgagtcagttggaaagaacaaactctga 440

                                                                       
Query: 241 gctcaccaggtttcagtcacgggtgaggatagcaagcaaagaccaggaatcctagggtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcaccaggtttcagtcacgggtgaggatagcaagcaaagaccaggaatcctagggtgc 500

                                                                       
Query: 301 cacagcaagaccaatgtaggaacaacactaaggctggcaaaggccatggctccgtgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagcaagaccaatgtaggaacaacactaaggctggcaaaggccatggctccgtgaaat 560

                                                                       
Query: 361 taagaaattgtccaagacatgggcacagcagagagaacaaacagtggatgcctgtggcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 taagaaattgtccaagacatgggcacagcagagagaacaaacagtggatgcatgtggcga 620

                                                                       
Query: 421 tttcaggaagctcgccccatccctttagctaagagaatgcaaagaagaaaatcagaggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcaggaagctcgccccatccctttagctaagagaatgcaaagaagaaaatcagaggct 680

                                                      
Query: 481 gtggagagctagaacagtggcagcctgcggttaagaggcacac 523
           ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 681 gtggagagctacaacagtggcaggctgcggttaagaggcacac 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)