Query= MSMg01no484_f03.b1 MSMg01no484_f03.b1 CHROMAT_FILE:
MSMg01no484_f03.b1 PHD_FILE: MSMg01no484_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:50 2005
(283 letters)
>mm_chr10_75603983_75604665
Length = 683
Score = 373 bits (193), Expect = e-108
Identities = 267/319 (83%), Gaps = 48/319 (15%)
Strand = Plus / Plus
Query: 5 gaattcttaac-tgccggaacgtttgtttcacataatcaaatttaaatatatttccgatg 63
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcttaacatgc-ggaacgtttgtttcacataatcaaatttaaatatatttcccatg 263
Query: 64 gattcccctgacactcgcaagtggcggtgacattgcttgcagccattcataccacagcaa 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 gattcccctgacactcgcaagtggcggtgacattgcttgcagtcattcataccacagcaa 323
Query: 124 cagtggtgtctagttcctggctttgctgatgatttattgatgccttatcctgtttcagat 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtggtgtccagttcctggctttgctgatgatttattgatgccttatcctgtttcagat 383
Query: 184 gagagaga---agg-------------agagagagagagagagagaga-a---------- 216
|||||||| ||| ||||||||||||||||||||| |
Sbjct: 384 gagagagagggagggagggagggagggagagagagagagagagagagagagagagagaga 443
Query: 217 -----agagagagagaa--------------agagagagagagaggaggccagagcatgt 257
|||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 444 gagagagagagagagaatgagagagagagagagagagagagagaggaggccagagcatat 503
Query: 258 ggagagagtgggggggggg 276
|||||||||||||||||||
Sbjct: 504 ggagagagtgggggggggg 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no484_f03.g1 MSMg01no484_f03.g1 CHROMAT_FILE:
MSMg01no484_f03.g1 PHD_FILE: MSMg01no484_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:50 2005
(555 letters)
>mm_chr10_75805922_75806876
Length = 955
Score = 1036 bits (536), Expect = 0.0
Identities = 551/556 (99%), Gaps = 1/556 (0%)
Strand = Plus / Minus
Query: 1 ttttt-tttttaaatatatgcatttcccctgcatgtttgtctgtatatcttatgcgtgcc 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tttttctttttaaatatatgcatttcccctgcatgtttgtctgtatatcttatgcgtgcc 874
Query: 60 tggtgttccctggaggccagaattgggtcctagattcatgttggtgctgtgacttgaacc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tggtgttccctggaggccagaattgggtcctagattcatgttggtgctgtgacttgaacc 814
Query: 120 caggtcttctggaagaacggccagtgcacttaaccactgagccatctctccagctccatt 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 813 caggtcttctggaagaacggccagtgcgcttaaccactgagccatctctccagctccgtt 754
Query: 180 ttgagaatccttgattctctttggaggcgtggttgggaatgattctgagaaaaaaggtct 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttgaaaatccttgattctctttggaggcgtggttgggaatgattctgagaaaaaaggtct 694
Query: 240 attgtactggatttgatatgactccccaggggaaatcgcatagttgtagtttggcttttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 attgtactggatttgatatgactccccaggggaaatcgcatagttgtagtttggcttttg 634
Query: 300 catatcaaatatgttgttgcagattgctcctcattacggctccagaatatcggttatttc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 catatcaaatatgttgttgcagattgctcctcattacggctccagaatatcggttatttc 574
Query: 360 agttccgtagggttatatagcttttaatgctcgctacgagtttacagttaattaaattat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agttccgtagggttatatagcttttaatgctcgctacgagtttacagttaattaaattat 514
Query: 420 ttcctcaaagcaaaaacttcataacttgtggcaggaccgaagtatgtcagcgatagaagt 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 513 ttcctcaaagcaaaaacttcataacttgtggcaggactgaagtatgtcagcgatagaagt 454
Query: 480 agctcttaagttaatcaaatctacttatactgatactgttttagacatacatggggttta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agctcttaagttaatcaaatctacttatactgatactgttttagacatacatggggttta 394
Query: 540 tgtaaggaaagggtat 555
||||||||||||||||
Sbjct: 393 tgtaaggaaagggtat 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
