BAC Information

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BAC

Clone NameMSMg01-485D14
Chromosome10 (Build37)
Map Location 51,648,029 - 51,648,647
singlet/doubletsinglet
Overlap genenone
Upstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485D14.T7 (MSMg01no485_d14.b1)MSMg01-485D14.TJ (MSMg01no485_d14.g1)
ACCAG564720AG564721
length726742
length of high quality
(start - end)
670 (57 - 726)619 (84 - 702)
definitionCHROMAT_FILE: MSMg01no485_d14.b1 PHD_FILE: MSMg01no485_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:05 2005CHROMAT_FILE: MSMg01no485_d14.g1 PHD_FILE: MSMg01no485_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGA
GAATCCGCGGAATTCTAGAAAGTTACCTAGAATTTCTTTCTTTACTTCTG
TCTTCACACAGTTTTTACTCAGTAGAGTGTTGTTCAGTTTTTATGAGTTT
GCAAGCTTTCTGTGTTTTATTCCTCTATTGTTGTTGAAATCAAGCTTTAA
TCCATGGTGCTCTGATAAGATACAGGGGATTATTTCAATTTTCTTAGATT
TGTTGAGACTTGCTTGGTGTTCAAATAAGTGGTCAGTTTTGGAGAAAGTT
CTGTGAGGTGCTGAGAAGGTGTATTTTTTTGTATTTGAGTAAAATGTTCT
GTAAATATGTTAGGTTGGTTTGGTTTCTATAACTGTTAGATCTAGTGTTT
CTCTGTTTAGTTTTTGTCTGGATGACCTATACATTGGTTAGAATGGGGTA
TTAAAGTTTCCTTCTATCAGTATGTGAGGATCAATATGTGATCTAAGTTA
TAGTTGTATTTCTTTTACATTCTTGGGTGTTCTTGTGTTTGGAGCATAGA
TGCTAAGGATTAAAATGTCATCTTAGTGGAATTTTTCTTGGTTAAATATG
TCCTTCCCTATCACTTTTGATTAATTTTGGTTTGAGGTCTTTTTTAGTAG
ATGTTAAAGTGAATACAATAGCTTGATTTTTCAGTTTTTATCTTGCAATA
TCTTTTTCTATCCTTTACCCTGAGGT
TAATTTCACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACTTACCTGGTGG
TCATCTGGAATATGAGGGCAGGTTGGGCTCTGTTTCATATGTCCTATCCT
TTATCAAAGGGTTTTGAGCAGGCTTTTGAGGAAAGTATAGGAAACTAGAA
TCAAAAGTTTACAAAGTCTCTGTTTATATGCAATTTTCTGCCTCTCCATT
GCCTGGTGCTACTCAAACAGCAAATTCTAAAGTCAATATGGGAAACTACA
AACAAGTGTGGACATGGAAAACTGTCCTTGCAGACAAGTCTTTCACAGTG
GCTAGAAGCATACATCTGGAAATAACGCCTTTGCTAAAGTTAAAATATTT
TGCTCTCAGTCCAGTGAGGAAACATGAAAGTAAATTTCAGGATTATGTGA
AATATTTGGTAATCGTCTAAGAGACTTATTCTATTCTTTATGCTTCTTCA
AGCTTATTAGGTGTTCCTCTTCACGTGGAAGCAGCTTATTTAAACATCAG
TATTAAGATGCACAGGCTCTATCTTAAATTTCCTTGAACATAATATATAG
CAAGTCTTGACATTTTTAGTTTTAAATGAGAAGGAGTTAGAAGGAGGATT
ATGAATCCCTGGGTTCTTTCCTGTACATATAATACATGTATTTTAGGGCA
CAAGGCTACAGTTGACCTGAACTGATATTTTATACCACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_d14.g1 MSMg01no485_d14.g1 CHROMAT_FILE:
MSMg01no485_d14.g1 PHD_FILE: MSMg01no485_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:06 2005
         (619 letters)



>mm_chr10_51647829_51648847
          Length = 1019

 Score = 1135 bits (587), Expect = 0.0
 Identities = 611/619 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcacttacctggtggtcatctggaatatgagggcaggttgggctctgtttcatatgtc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tttcacttacctgttggtcatctggaatatgagggcaggttgggctctgtttcatatgtc 760

                                                                       
Query: 61  ctatcctttatcaaagggttttgagcaggcttttgaggaaagtataggaaactagaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ctatcctttatcaaagggttttgagcaggcttttgaggaaagtataggaaactagaatca 700

                                                                       
Query: 121 aaagtttacaaagtctctgtttatatgcaattttctgcctctccattgcctggtgctact 180
            |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 699 gaagtttccaaagtctctgcttatatgcagttttctgcctctccattgcctggtgctact 640

                                                                       
Query: 181 caaacagcaaattctaaagtcaatatgggaaactacaaacaagtgtggacatggaaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caaacagcaaattctaaagtcaatatgggaaactacaaacaagtgtggacatggaaaact 580

                                                                       
Query: 241 gtccttgcagacaagtctttcacagtggctagaagcatacatctggaaataacgcctttg 300
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 579 gtccatgcagacaagtctttcacagtgactagaagcatacatctggaaataacgcctttg 520

                                                                       
Query: 301 ctaaagttaaaatattttgctctcagtccagtgaggaaacatgaaagtaaatttcaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctaaagttaaaatattttgctctcagtccagtgaggaaacatgaaagtaaatttcaggat 460

                                                                       
Query: 361 tatgtgaaatatttggtaatcgtctaagagacttattctattctttatgcttcttcaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tatgtgaaatatttggtaatcgtctaagagacttattctattctttatgcttcttcaagc 400

                                                                       
Query: 421 ttattaggtgttcctcttcacgtggaagcagcttatttaaacatcagtattaagatgcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttattaggtgttcctcttcacgtggaagcagcttatttaaacatcagtattaagatgcac 340

                                                                       
Query: 481 aggctctatcttaaatttccttgaacataatatatagcaagtcttgacatttttagtttt 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 339 aggctctatcttaaatttccttgaacataatatatagcaagtcttaacatttttagtttt 280

                                                                       
Query: 541 aaatgagaaggagttagaaggaggattatgaatccctgggttctttcctgtacatataat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaatgagaaggagttagaaggaggattatgaatccctgggttctttcctgtacatataat 220

                              
Query: 601 acatgtattttagggcaca 619
           |||||||||||||||||||
Sbjct: 219 acatgtattttagggcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)