BAC Information

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BAC

Clone NameMSMg01-485I10
Chromosome10 (Build37)
Map Location 90,343,416 - 90,343,868
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneLOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485I10.T7 (MSMg01no485_i10.b1)MSMg01-485I10.TJ (MSMg01no485_i10.g1)
ACCAG564949AG564950
length746732
length of high quality
(start - end)
450 (78 - 527)54 (257 - 310)
definitionCHROMAT_FILE: MSMg01no485_i10.b1 PHD_FILE: MSMg01no485_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:30 2005CHROMAT_FILE: MSMg01no485_i10.g1 PHD_FILE: MSMg01no485_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATC
CGCGGAATTCCAGATTGTTTTACGTGTCCCACTACCTTTTCCTGGCCAAA
GCCTGCCATTTTGGCAGGGAACAGTTTGTAAGGTGATATGCAGAGAAAGA
CAGATCGACAGACTCATTTCTGTGGTGTTTTATTTGTGGGTAAACTTGGG
AGGATTCAGAACAGACTGTAGTATTCCTATGATCACACAGAAAGTGTCAG
TCATCAGACAAGCACCCAGTTTACGGGGTACATGAGTCTCTCAGGGAAGC
AACAACTTTTGAGCAGAATGGGGACAGGAGGGGGGAAGCACAGTGCTAGT
TATTTCTTTAAAACTGTCTCCCTTGGGCCCCACGGAATGCTGGGAGAATG
TCAGCTGTGTACCACGAGGAATAGGAAGAGTGCTCATTCTGAAAATCAGA
ACCTTGGACAGCAACACCCTGCCGTAGCCCTGGGCTCCTGAGGATAAATG
TCTCCTTTCCCTTCCCCAAGTGTCAGACCATTAGCAGCCTCATCAGGCTG
AAGTAATGATGTAAACAAGATGTCTTATAAAATCACCTATGTCTATGACC
CTTGCGTTTGTACTTTCCCTCTAAGCCTCTTTTGTGTGCCCAACAGGGAA
CCCGGCATTTCTTTTTACTTTGTTGGCCGAAGAACCTATCCTTTCCCTTT
TCCCATCCTGGAACGGGTGGAACTCCCTTTGTGGAAACATTGAACG
NAGGGCATGCAGTGGTAGGATGGGGGNGGNGGGCCGTTCCGTACGCCGNA
GNNANANAAGGACTTACANNCACCGGGGNGAGGNAAACCGAAGGGCAGAG
AAGCACCGGAAAAAAGGTTTTACCCCCAAAANCAACAGGGAAAGGCAAAN
CAAAACAACCCGGAGAANCCACCGCACACCAGNCAGAAGGGCNAAGAACA
AAAANNCAGGGGACAGCAGAAGCNGGCGAGGANGNGGAGAAAGAGGAACA
CTCTTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGNTCCTTTTTTTTTTTGACANAGNACNACCGGAGGAACCAG
CAANACCNCTCCTGGGCACACANCCAGAAGAAGCCCCAACGGGNAAGAAG
GACACAGGCNCCACNANNGCCACAGCAGCCTTANNGACAANAGCCAGAAG
CGGGAAAGAACCNAGANGCCCCNCAACAGAGGAAGGGANACAGAAGAAGN
GGNACANCCACACAAGGGAGNACNACNCAGCNANAAAAAAGAAGGAANNN
AGGAAANNCCCAGCCAAAGGGANGGACCNGGAGGGCANCACCCNGAGNGA
GGGAACACACNCACAAAGAAACCCACACAANAAGCACCCACCGAAAAGGG
GATATTATCCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCT
AAACACATGGAACTCAAGAAGAATGAAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_i10.b1 MSMg01no485_i10.b1 CHROMAT_FILE:
MSMg01no485_i10.b1 PHD_FILE: MSMg01no485_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:30 2005
         (450 letters)



>mm_chr10_90343216_90344068
          Length = 853

 Score =  793 bits (410), Expect = 0.0
 Identities = 442/454 (97%), Gaps = 5/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccactaccttttcctggccaaagcctgccattttggcagggaacagtttgtaaggtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cccactaccttttcctggccaaagcctgccattttggcagggaacggtttgtaaggtgat 260

                                                                       
Query: 61  atgcagagaaagacagatc-gacagactcatttctgtggtgttttatttgtgggtaaact 119
           | ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aggcagagaaagacaga-ctgacagactcatttctgtggcgttttatttgtgggtaaact 319

                                                                       
Query: 120 tgggaggattcagaacagactgtagtattcctatgatcacacagaaagtgtcagtcatca 179
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 320 tgggaggattcagaacagactgtagtattcctacaatcacacagaaagtgtcagtcatca 379

                                                                       
Query: 180 gacaagcacccagtttacggggtacatgagtctctcagggaagcaacaacttttgagcag 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacaagcacccagtttacagggtacatgagtctctcagggaagcaacaacttttgagcag 439

                                                                       
Query: 240 aatggggacaggagggggg---aagcacagtgctagttatttctttaaaactgtctccct 296
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatggggacaggagggggggggaagcacagtgctagttatttctttaaaactgtctccct 499

                                                                       
Query: 297 tgggccccacggaatgctgggagaatgtcagctgtgtaccacgaggaataggaagagtgc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggccccacggaatgctgggagaatgtcagctgtgtaccacgaggaataggaagagtgc 559

                                                                       
Query: 357 tcattctgaaaatcagaaccttggacagcaacaccctgccgtagccctgggctcctgagg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcattctgaaaatcagaaccttggacagcaacaccctgccgtagccctgggctcctgagg 619

                                             
Query: 417 ataaatgtctcctttcccttccccaagtgtcaga 450
           |||||||||||| |||||||||||||||||||||
Sbjct: 620 ataaatgtctccattcccttccccaagtgtcaga 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 853
Length adjustment: 10
Effective length of query: 440
Effective length of database: 843
Effective search space:   370920
Effective search space used:   370920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)