Query= MSMg01no485_j01.b1 MSMg01no485_j01.b1 CHROMAT_FILE:
MSMg01no485_j01.b1 PHD_FILE: MSMg01no485_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:33 2005
(268 letters)
>mm_chr10_6551614_6552282
Length = 669
Score = 460 bits (238), Expect = e-134
Identities = 259/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Minus
Query: 2 gaattctatagctgtttgc-gtgaattctatagctgctgctgggcatccttgcttctgtc 60
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattctatagctg-ctgctgtgaattctatagctgctgctgggcatccttgcttctgtc 370
Query: 61 ccagtgacatgggcatctatgg-aaaaaaatactaataatatcagtcaacatttacaaca 119
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 369 ccagtgacatgggcatctatggaaaaaaaatactaaaaatatcagtcaacatttacaaca 310
Query: 120 aaagaagagacaggaaaagagaatattctttgaattctacttatttttgtaagttgttgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaagaagagacaggaaaagagaatattctttgaattctacttatttttgtaagttgttgt 250
Query: 180 ttattttttttagtcattacctttataggaaaagcaggatgacttttaggtggtggtgat 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttatttattttagtcattacctttataggaaaagcaggatgacttttaggtggtggtgat 190
Query: 240 aatggtggtggtggtgatggtgtgtg 265
|||||||||||||||||||| |||||
Sbjct: 189 aatggtggtggtggtgatggggtgtg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space: 170940
Effective search space used: 170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no485_j01.g1 MSMg01no485_j01.g1 CHROMAT_FILE:
MSMg01no485_j01.g1 PHD_FILE: MSMg01no485_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:33 2005
(634 letters)
>mm_chr10_6418906_6419939
Length = 1034
Score = 1143 bits (591), Expect = 0.0
Identities = 624/635 (98%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 1 ttcttttatgtttcattgtttgatttgaagcccaaagaagtttcatacaaagcaaaggtg 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttcttctatgtttcattgtttgatttgaagcccaaagaagtttcatacaaagcaaaggcg 260
Query: 61 attgattagctgtgtgattgtttgcttgcttgctttgtagaactggatggagtcttagca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 attgattagctgtgtgattgtttgcttgcttgctttctagaactggatggagtcttagca 320
Query: 121 tcccaggcaaatcctctgccctccattgatcttttcatcctcttcaccatttctcccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccaggcaaatcctctgccctccattgatcttttcatcctcttcaccatttctcccttt 380
Query: 181 gcgatttagttgttggagaaaccagaccattcattctgaccacatggtcaaagtctctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgatttagttgttggagaaaccagaccattcattctgaccacatggtcaaagtctctgg 440
Query: 241 ggtcctggtgacacacaacggtcccctttctgcgctctgtccactgtactcctgagggtc 300
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gttcctggtgacacacaacggtcccctttctgcgctctgtccactgtactcccgagggtc 500
Query: 301 aacagaggtttgcttaggttgaggttttataatttggcaggatgcaccatagggttgccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagaggtttgcttaggttgaggttttataatttggcaggatgcaccatagggttgccc 560
Query: 361 catgctcccagcaggagctgcaacatctgatgtcttttttgtgatggtaacaggcgctgg 420
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 catgctcccatcaggagctgcaacatctgatgtcttttttgtgatggtaacaggtgctgg 620
Query: 421 tgattactgcacaggtctatcagaggctatatataatggtgatatttctattttggttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgattactgcacaggtctatcagaggctatatataatggtgatatttctattttggttat 680
Query: 481 tccttctttattcattattctcagaataatgtgctggtttcctaatagcccatatagggc 540
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 681 tccttctttattcattattctcagaataatgtgttggtttcctaatagcccataaagggc 740
Query: 541 ctgtctgattttaatgccactataaattcataaata-anaacatttatttcatatgctta 599
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 741 ctgtctgattttaatgccactataaattcataaataga-aacatttatttcatatgctta 799
Query: 600 agttgttttcaattaactgtctttattggttgtgc 634
|||||||||||||||||||||||||||||||||||
Sbjct: 800 agttgttttcaattaactgtctttattggttgtgc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
