Query= MSMg01no486_l10.b1 MSMg01no486_l10.b1 CHROMAT_FILE:
MSMg01no486_l10.b1 PHD_FILE: MSMg01no486_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:05 2005
(545 letters)
>mm_chr10_55877797_55878745
Length = 949
Score = 942 bits (487), Expect = 0.0
Identities = 529/545 (97%), Gaps = 4/545 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatttggcctcactcttggactaaattaagtctctttcttcattccttgacat 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaattaggactcactcttggactaaattaagtctctttcttcattccttgacat 264
Query: 65 gacattgatgccaaggcccatccctgcctgaggatttctaagcggctaattgtggttgtg 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 gacattgatgccaaggcccatccctgcctgaggatttctaagcagctaattgtggttgtg 324
Query: 125 aagggtgaaacattgtcttcaatggtgtgacatctcgtcaagtgtccatgtgccagaaac 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 aagggtgaaacattgtcttcaatggtgtgacatctcgtcaagtgtccatgcgccagaaac 384
Query: 185 aaaccctcattcttgctcctataaacaatccaaatgcagccaactggcataagaccagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaccctcattcttgctcctataaacaatccaaatgcagccaactggcataagaccagaa 444
Query: 245 tacaaggcacgttgaggagcataatgtgattagcagagatggagtagaaaagagaagag- 303
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct: 445 tacaaggcacgttgaggagcagaaggggattagcagagatggagtagaaaagagaagaga 504
Query: 304 ---gggttctgttatagacatacacttcatacatgtatacaatggcataaatgaagccat 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 gaggggttctgttatagacatacacttcatacatgtatacaatggcataattgaagccat 564
Query: 361 tattatgcacaattagcatatgctaatgaaacactaaaataagttttagaaaagttaagc 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattatgtacaattagcatatgctaatgaaacactaaaataagttttagaaaagttaagc 624
Query: 421 caagcgactcacacaggaacatacctatgaaatatatgtcattaagtcagtgaattagtc 480
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 625 caagcgactcacacaggaacatgcctatgaaatatatgtcattaagtcaatgaattagtc 684
Query: 481 ataaaagcaataaaaacgattccacattcaccacatgtaaaacaggaaacaaattacatg 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataaaagcaataaaaaagattccacattcaccacatgtaaaacaggaaacaaattacatg 744
Query: 541 agtgg 545
|||||
Sbjct: 745 agtgg 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 949
Length adjustment: 10
Effective length of query: 535
Effective length of database: 939
Effective search space: 502365
Effective search space used: 502365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_l10.g1 MSMg01no486_l10.g1 CHROMAT_FILE:
MSMg01no486_l10.g1 PHD_FILE: MSMg01no486_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:05 2005
(530 letters)
>mm_chr10_56021968_56022897
Length = 930
Score = 627 bits (324), Expect = 0.0
Identities = 340/346 (98%), Gaps = 2/346 (0%)
Strand = Plus / Minus
Query: 1 tggtgtgtgagggaaggaaagccttctcctggtcgttctattggacatttgtgtgccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tggtgtgtgagggaaggaaagccttctcctggtcgttctattggacatttgtgtgccata 287
Query: 61 gccacagcagccctctctgttcctgcaggttggtggatatgaggagcacacttatttcca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gccacagcagccctctctggtcctgcaggttggtggatatgaggagcacacttatttcca 227
Query: 121 gtttctctcattctcttcttaaatatttttcttttttttctcttctcttcttttctt--c 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 226 gtttctctcattctcttcttaaatatttttcttttttttctcttctcttcttttcttccc 167
Query: 179 cccccccaacactgttcttgccagccccacaaagatttatttatttattatatgtaagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cccccccaacactgttcttgccagccccacaaagatttatttatttattatatgtaagca 107
Query: 239 cactgtacctgttttcagacacaccagaagagggcatcagatctcatcgtagaaggctgt 298
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 106 cactgtacctgttttcagagacaccagaagagggcatcagatctcatcatagaaggctgt 47
Query: 299 gagccaccatgtggttgctgggatttgaactcaggacctctggaag 344
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 gagctaccatgtggttgctgggatttgaactcaggacctctggaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
