BAC Information

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BAC

Clone NameMSMg01-488D23
Chromosome10 (Build37)
Map Location 52,292,789 - 52,293,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream geneSlc35f1, Pln, EG432460, Mcm9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488D23.T7 (MSMg01no488_d23.b1)MSMg01-488D23.TJ (MSMg01no488_d23.g1)
ACCAG567017AG567018
length707771
length of high quality
(start - end)
649 (20 - 668)534 (75 - 608)
definitionCHROMAT_FILE: MSMg01no488_d23.b1 PHD_FILE: MSMg01no488_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:06 2005CHROMAT_FILE: MSMg01no488_d23.g1 PHD_FILE: MSMg01no488_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATCGAGAGGATCCGCGGAATTCTCTGTTTTTCCCATACCC
CATTTTGATAGGGTTATTTGGTTTTCTGGAGTCTAACTTCTTGAGTTCTT
TGTATATTTTGTATATGAACCCTCTATTGGATGTAGGGATGGTAAAGGCC
TTTTCCCAATCTGTTGGCTGCTGTTTTGTCCTATTGACAGTGTCCTTTGC
CTTATAGAAGCTTTGCAATTTTATCAGGTCTTATTTGTTAACTGTTGATT
TTAGAGCATGAGCCATTGGTGTTCTGTTCAGGAAATTTTCCACTGTGCCA
GTGTGTTTGAGATTCTTTCCTACTTTCTCTTTGATTAGATTCATTGTACC
TGGCTTTATATGTGGGTTCTTAATCCACTTGGACTTGAACTTTGTACAAG
GAGATAAGAATAGATCAATTTGCATTCTTCTACATGCCAACTGAGGGTTG
AACCAGCACCGTTTGTTGAAAATGCTGTCTTTTTTCCCACTGGATGGTTT
TGTCTTTTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGAATTGTTTCT
GGGTCTTCAATTCTATTCCATTGATCTACCTTCCTGTCTCTGTACCAATA
CCATGTGATTTCTATCACTATTACTCTCGGAGATCCCAATGGGAGAGAAA
GGCAAAGGACTGAAGGATCAGAGGGAGATTGCAACCCCATAGAAAAAAAC
AGTATCA
CATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAACTGTGTTCTTGGCCAGATTTAC
AGTACAAGCCATGTGTTTCTTTCTGTGAAAGAAGTCTTAAATACAACCAG
CAGACTTTTTTATACCTACCCTTGCACCTAAAACTTTTGGAAACTTCTTT
TTGCAGATTTGACACAGTGGAACATCTGTTTTAACTAAAGAATTTCCTTT
AATACTTCTTAAGATTCTGATTGCCTTTTTTTCCCTTAGTTCCCCCCCCA
CTAGATAGAATTATAAGCTGACAGGGTTTAATATTTTTATTTTTAAAATT
TGTTTTATTTTTCATTATGTGTATATATTTATCTACCACCACTTTGCTAG
AGTAGGTTAATTTCTAATTACATCCTAAGTCTTATCCTTATATACACAGA
TAAATGAAGCTATCATCCTATATTAAAGAGTCTTCTCTTTGTAGCAAATG
GAAAGCATCAGAGAAAACTACAGCTGGAACTGGCACCAGTGGGAAGATCA
TAACTCATGCACCTATGGCTCAGAGAGCATTGCAGAAGTGGGAATGGAAA
GACTGTAAGAACCAGAACACCAGGAAGTCTGCAGTGAAACAGTCTCTCAT
GGAAATAGTGGTAGAAAAGCCAGCAGCCAGTTCAGCCAGCCAGGACCATA
CCTGCCCATGCTCTGCTAGGNCATACCCTTCTGAGGACCACGAAGATGTC
TGTTGCCCATGTGCCATCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_d23.g1 MSMg01no488_d23.g1 CHROMAT_FILE:
MSMg01no488_d23.g1 PHD_FILE: MSMg01no488_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:06 2005
         (534 letters)



>mm_chr10_52292589_52293523
          Length = 935

 Score =  986 bits (510), Expect = 0.0
 Identities = 529/536 (98%), Gaps = 3/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaactgtgttcttggccagatttacagtacaagccatgtgtttctttctgtgaaagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaactgtgttcttggccagatttacagtacaagccatgtgtttctttctgtgaaagaag 260

                                                                       
Query: 61  tcttaaatacaaccagcagacttttttatacctacccttgcacctaaaacttttggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaaatacaaccagcagacttttttatacctacccttgcacctaaaacttttggaaac 320

                                                                       
Query: 121 ttctttttgcagatttgacacagtggaacatctgttttaactaaagaatttcctttaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttttgcagatttgacacagtggaacatctgttttaactaaagaatttcctttaata 380

                                                                       
Query: 181 cttcttaagattctgattgcctttttttcccttagtt--ccccccccactagatagaatt 238
           ||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||
Sbjct: 381 cttcttaagattctgattgcctttttt-cccttagtttcccccccccactagatagaatt 439

                                                                       
Query: 239 ataagctgacagggtttaatatttttatttttaaaatttgttttatttttcattatgtgt 298
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 ataagctgacagggtttaatatttttatttttaaaatttattttatttttcattatgtgt 499

                                                                       
Query: 299 atatatttatctaccaccactttgctagagtaggttaatttctaattacatcctaagtct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatatttatctaccaccactttgctagagtaggttaatttctaattacatcctaagtct 559

                                                                       
Query: 359 tatccttatatacacagataaatgaagctatcatcctatattaaagagtcttctctttgt 418
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatccttatatacacagatagatgaagctatcatcctatattaaagagtcttctctttgt 619

                                                                       
Query: 419 agcaaatggaaagcatcagagaaaactacagctggaactggcaccagtgggaagatcata 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 agcaaatggaaagcatcagagaaaactacagctggaactggcaccagtgggtagatcata 679

                                                                   
Query: 479 actcatgcacctatggctcagagagcattgcagaagtgggaatggaaagactgtaa 534
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 actcatgcacctatggctcagagagcattgcagaagtggggatggaaagactgtaa 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)