BAC Information

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BAC

Clone NameMSMg01-489M17
Chromosome10 (Build37)
Map Location 109,839,055 - 109,839,533
singlet/doubletsinglet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489M17.T7 (MSMg01no489_m17.b1)MSMg01-489M17.TJ (MSMg01no489_m17.g1)
ACCAG568192AG568193
length785784
length of high quality
(start - end)
561 (51 - 611)478 (75 - 552)
definitionCHROMAT_FILE: MSMg01no489_m17.b1 PHD_FILE: MSMg01no489_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:10 2005CHROMAT_FILE: MSMg01no489_m17.g1 PHD_FILE: MSMg01no489_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAATACCTTAGGCAATCAGTCCAAATTAAAATGTGGTGTT
TATATTCACAGGCATTTCTCAAAGCAAAATAGCCAAGTGGTATATAAAAT
CACAGACAAGATTCAGTGACATTAGTCATCAGGAAACGGAAAATCAAAGC
TGTGTGGAGCTATGTCCTGATCTTGGTTAGAATGACTATTATTTAAAAAA
ATGCTGGAAATGGTGTGGAGAAAATGGACTCGTATACTTTTGGGGATGGG
AATACAAATTAATATGACTATAGCAGAGAATAGCTTAGAGATTCTTGGAA
AAACAATCTACCAGCTATCTCAGTAATGTACGCATATCCAAAGGAAAGGG
AAACGGTGTATTATAGTAAAACCTGAGCTGCATGTTCACTGCAGCTTTAT
TCATTATAATTAAGATATGGATCATTCTAGATTTCTATCAATGGATGAAT
GGATTAAAATGCACTATAAATACACTGTAGAGCTTTATTTACCCATAAAA
AGTAGTAAAATTCTGTCGCTTGTGGCAAAATGGATAGAACTGGAGGATAT
TAACCTAAGTGGTGCACATAGAGCATACACTGAAAATAGCACTGGCCAGC
TTTTGAGACAGCATGGAGACTACTAGAGGTTGTAAACGGGACACTCAATA
AAGAAGGTTTTGGTACAATACAGACACCCTTATTGGTGCTACAGTTCTAT
CCACTATGGATAGTACAAGTCTACTGTCTGTGTGG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCCATGGGTAGCTTGAACATTGCAC
TTCTGCCTCTGGAATTGGATACCCGAATGTAGCTCTCTGTGTGCTTTGTG
TTGGTTAATATTCCATATCACCAGTGTGGTCTCAATCCCCTGCTTTTCTA
GAAAACTTTCCTCTTTCTGTTTGCCATCCTTTGAAATTCTGTATTTTGTG
TCTGAAGGCTTCAATATGTACAATTGAAATAGCAATTAGTTAGCTCAAGA
AATCTGAGAGTTATCCTTTTTTTCTCTTGAGAAAGGGAACAGATTGATGA
GTGTACAATATGTAAGTGGCTATTTGAGAAGGGACATTTGAGGCAATAAA
ATTGTTGAGCTATAAAATGTTGCTTATGCTTTTTTTGTCTCTTGAATACA
CTGGGGAGAAATATGGTACATCAAAATTTAGTTAAATACATATTTTAGTG
ATTTCCAAGAAGTATCCAGTTTAAGGTAAACAAACCATGAAATAAAATGC
AGACCCATAGATAAGGCAGGAATAAAGCAAGGCAAAATATCACTTATTAT
CACACTGGAAGTTTTTAAATGGGTCCTGTCTATTCATGTAACCTGAAAGT
TTAAGTCAAATATGTCCTTATTTGNTGCCTCCTTTCTTGGCTTATTTTTC
TAATCATTCTAGAAGTGCAATCCAAGATGAACATCTTTCCCTCTTGTTCT
ACAAAAATTATGGGGACTTGGGGTTATTTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_m17.g1 MSMg01no489_m17.g1 CHROMAT_FILE:
MSMg01no489_m17.g1 PHD_FILE: MSMg01no489_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:10 2005
         (478 letters)



>mm_chr10_109838855_109839733
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%), Gaps = 1/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatgggtagcttgaacattgcacttctgcctctggaattggatacccgaatgtagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agccatgggtagcttgaacattgcacttctgcctctggaattggatacccgaatgtagct 620

                                                                       
Query: 61  ctctgtgtgctttgtgttggttaatattccatatcaccagtgtggtctcaatcccctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctctgtgtgctttgtgttggttaatattccatatcaccagtgtggtctcaatcccctgct 560

                                                                       
Query: 121 tttctagaaaactttcctctttctgtttgccatcctttgaaattctgtattttgtgtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttctagaaaactttcctctttctgtttgccatcctttgaaattctgtattttgtgtctg 500

                                                                       
Query: 181 aaggcttcaatatgtacaattgaaatagcaattagttagctcaagaaatctgagagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaggcttcaatatgtacaattgaaatagcaattagttagctcaagaaatctgagagttat 440

                                                                       
Query: 241 cctttttttctcttgagaaagggaacagattgatgagtgtacaatatgtaagtggctatt 300
           ||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccagctttgctcttgagaaagggaacagattgatgagtgtacaatatgtaagtggctatt 380

                                                                       
Query: 301 tgagaagggacatttgaggcaataaaattgttgagctataaaatgttgcttatgc-tttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 tgagaagggacatttgaggcaataaaattgttgagctataaaatgttgcttatgcttttt 320

                                                                       
Query: 360 tttgtctcttgaatacactggggagaaatatggtacatcaaaatttagttaaatacatat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttgtctcttgaatacactggggagaaatatggtacatcaaaatttagttaaatacatat 260

                                                                      
Query: 420 tttagtgatttccaagaagtatccagtttaaggtaaacaaaccatgaaataaaatgcag 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttagtgatttccaagaagtatccagtttaaggtaaacaaaccatgaaataaaatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space:   406692
Effective search space used:   406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)