Query= MSMg01no490_l14.b1 MSMg01no490_l14.b1 CHROMAT_FILE:
MSMg01no490_l14.b1 PHD_FILE: MSMg01no490_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(553 letters)
>mm_chr10_111238107_111239057
Length = 951
Score = 992 bits (513), Expect = 0.0
Identities = 542/552 (98%), Gaps = 2/552 (0%)
Strand = Plus / Plus
Query: 2 gtggtaaagtgtatctttaggcacttgcccaggcgatgatggtaatacttaacaggattt 61
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 202 gtggtaaagtgtatctttaggcacttgcccaggcgatgatggtaacacttaacaggattt 261
Query: 62 tcccactaggaaaattcttcaattccccagaaaatactattaagagctctcatgttatag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcccactaggaaaattcttcaattccccagaaaatactattaagagctctcatgttatag 321
Query: 122 aaagagaacccattttcctacttagactgtacttgtggatgtctattttttctaagcatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaagagaacccattttcctacttagactgtacttgtggatgtctattttttctaagcatt 381
Query: 182 tgtatacttctccccacgctgaattgattttagattagcctttttaaacacagttctttg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 382 tgtatacttctccccacgctgaattgattttagattagcctttttaaacacagttcct-g 440
Query: 242 tantgtatgtcattgtaagcccgactgcaatggagaagcaagtgagtgggtcctgccttg 301
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattgtatgtcattgtaagcccgactgcaatggagaagcaagtgagtgggtcctgccttg 500
Query: 302 ttggaagcctgtttataatagacagataaatttgtttcccgcaaactgggcatcccacgg 361
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 501 ttggaagcctgtttataatagacagataaatttgttttcggcaaactgggcatcccacgg 560
Query: 362 caaccttggcatatctgactcctaaacagtctctgtgtattcctcaaacagacagcggcc 421
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 caaccttggcatatctgactcctaaacagtctctgtgtattccccaaacagacagcggcc 620
Query: 422 aagtcaagcagtgtgttcttccagcattgcaaggacacgcctgtgcatttttttttccct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 aagtcaagcagtgtgttcttccagcattgcaaggacacgcctgtgcatttttttt-ccct 679
Query: 482 ccaacttttgcttagatttttttttcccctttgagctgctgttgtaaaagttgagtgtgc 541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 ccaacttttgcttagattttttttccccctttgagctgctgttgtaaaagttgagtgtgc 739
Query: 542 tttggtatgtct 553
||||||||||||
Sbjct: 740 tttggtatgtct 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 951
Length adjustment: 10
Effective length of query: 543
Effective length of database: 941
Effective search space: 510963
Effective search space used: 510963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_l14.g1 MSMg01no490_l14.g1 CHROMAT_FILE:
MSMg01no490_l14.g1 PHD_FILE: MSMg01no490_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(669 letters)
>mm_chr10_111400877_111401945
Length = 1069
Score = 1189 bits (615), Expect = 0.0
Identities = 650/665 (97%), Gaps = 10/665 (1%)
Strand = Plus / Minus
Query: 14 tacacagagaaactctgtcttg-aaaaaaaagaag----aagaaaaaagaaaaagaaaga 68
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 1068 tacacagagaaactctgtcttgaaaaaaaaagaagaagaaagaaaaaagaaaaagaaaga 1009
Query: 69 aagaaagccaactgagcaagcca---gaagcaatccagtaaacagcacccttccatggcc 125
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1008 aagaaagccaactgagcaagccaggggaagcaatccagtaaacagcacccttccatggct 949
Query: 126 actgcatcagctcctaccttcaggtttctttcctgtttgagttcctgccctgacttcctt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 actgcatcagctcctaccttcaggtttctttcctgtttgagttcctgccctgacttcctt 889
Query: 186 caatgatgaataatgatttggaggcataagccaaataaatcctttcctacaaacgttgct 245
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 888 caatgatggatagtgatttggaggcataagccaaataaatcctttcctacaaacattgct 829
Query: 246 tta-ttcgtattatttcattacaccaataatagcccttataaggacagaaaccataagcc 304
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttagtt-gtattatttcattacaccaataatagcccttataaggacagaaaccataagcc 770
Query: 305 caaaataaaccctcccatctataagttaccttggtcacggaatttgatcacagaaattga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 caaaataaaccctcccatctataagttaccttggtcacggaatttgatcacagaaattga 710
Query: 365 aaagtaagtaatacattgacccacttgtttacaggggactccctctatgtgatcttggtt 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaagtaagtaatacattgtcccacttgtttacaggggactccctctatgtgatcttggtt 650
Query: 425 aattaagcttccttttgtgttactgtttttatgtttaagaatgaatacaccctcgccttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aattaagcttccttttgtgttactgtttttatgtttaagaatgaatacaccctcgccttc 590
Query: 485 cctagagtggtttgaatgagaatggccacatgtaggctcatatgtttggttacttggtct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cctagagtggtttgaatgagaatggccacatgtaggctcatatgtttggttacttggtct 530
Query: 545 taatttggcagaactgtttggaaaaggtaaggagatatggcctggcttgaggatgtgtgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 taatttggcagaactgtttggaaaaggtaaggagatatggcctggcttgaggatgtgtgt 470
Query: 605 ccctgaatgggctttgaggcttcctaagactctcaccgttcccagtgtgcctcttgcttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ccctgaatgggctttgaggcttcctaagactctcaccgttcccagtgtgcctcttgcttt 410
Query: 665 ctttg 669
|||||
Sbjct: 409 ctttg 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
