Query= MSMg01no490_n14.b1 MSMg01no490_n14.b1 CHROMAT_FILE:
MSMg01no490_n14.b1 PHD_FILE: MSMg01no490_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:33 2005
(599 letters)
>mm_chr10_44547744_44548742
Length = 999
Score = 764 bits (395), Expect = 0.0
Identities = 490/539 (90%), Gaps = 30/539 (5%)
Strand = Plus / Minus
Query: 1 ttcactttagtattggtttcaacctatagctccatgtgatacagatatgcactttaaggt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 525 ttcactttagtattggtttcaacctatagctccatgggatacagatatgcactttaaggt 466
Query: 61 ataaccaataaatgcttaaccagtggacaggaaggtactaataatgatctcaacagaaga 120
||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 465 ataaccaataagtgcttattcagtggccaggaaggtactaataatgatctcaacagaaga 406
Query: 121 gagaagtcaaacaccattagattacagttaaaagaaatacattggaaagattcgtctaac 180
|||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 405 gagaagacaaacagcattagattacagttaaaagaaatacattggaaagattcatctaac 346
Query: 181 gttatttctaagactttcattgaatctagtgagagttttatacactgacaaccctctttt 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 attatttctaagaatttcattgaatctagtgagagttttatacactgacaaccctctttt 286
Query: 241 cctactccaaactatagcatatatattttaagtttcatgtattttggctgaatggagtgg 300
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cctactctaaactatagcacatatattttaagtttcatgtattttggctgaatggagtgg 226
Query: 301 tgtatatctctaaccttagaacttaagaacttttacttaggagactaagtaaaaatgatt 360
|||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 225 tgtatatctctaaccttaga--------------acttaggagaccaagtaaaaatgatt 180
Query: 361 acaagagtaagaccagactggtgtgtatagcaagactatatctaacaacaaacaaacaaa 420
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 179 acaagagtgagaccagactggtgtgcatagcaagactatatctaacaacaaacaaacaaa 120
Query: 421 caaacaaac-----------ca---caaa--ccccaccttcatccccaccatttttcctg 464
||||||||| || |||| ||||||||||||||||||||||||| |||
Sbjct: 119 caaacaaacaaacaaacaaacaaaccaaaacccccaccttcatccccaccattttttctg 60
Query: 465 cttactccttaggttttctgtccccttgttatgaatcctacactaataaagtttatctg 523
|| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 59 ctcactccttaggttttctgcccccttggtatgaatcctacactaataaagtttatctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_n14.g1 MSMg01no490_n14.g1 CHROMAT_FILE:
MSMg01no490_n14.g1 PHD_FILE: MSMg01no490_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:33 2005
(525 letters)
>mm_chr10_44476892_44477816
Length = 925
Score = 886 bits (458), Expect = 0.0
Identities = 501/524 (95%), Gaps = 16/524 (3%)
Strand = Plus / Plus
Query: 1 tggagcagggggctgggggtgggggactggtatccagccagtcatgtagttaccaaggtg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tggagcagggggctgggggtgggggactggtagccagccagtcatgtagttaccaaggtg 260
Query: 61 agagtctctgcagtgctgggttaaacccagcatggggcaatgttctgatctataacacga 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 261 agagtctctgcagtgctgggttaaacccagcatggggcaatgttctaatctataccatga 320
Query: 121 ttctttttcttttattacttttattttttaacagtgaagccattgcccctccctgttccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttttcttttattacttttattttttaacagtgaagccattgcccctccctgttccc 380
Query: 181 cttctacagttccttatcccattctttctcccccctgtctccaaaagaatgcccccccca 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 381 cttctacagttccttatcccattctttctccccc-tgtctccaaaagaatgccccccc-a 438
Query: 241 acacactttctctttcacacacacacacacacacacacacacacacacacacacacacac 300
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acacac--------------acacacacacacacacacacacacacacacacacacacac 484
Query: 301 tgtctcactgagaccagaccaggcaatcctctgctatatatattgggggtgggaggtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtctcactgagaccagaccaggcaatcctctgctatatatattgggggtgggaggtggg 544
Query: 361 gaagagtgatactagctcttgaatgctgcttggttggtggctcagtgtctgagagatctc 420
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 545 gaagagtgggactagctcttgaatgctgcctggttggtggctcagtgtctgagagatctc 604
Query: 421 agtggtccaggttagttgagacagatggtcttcctatggggccacccttctcctcagctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agtggtccaggttagttgagacagatggtcttcctatggggccacccttctcctcagctt 664
Query: 481 cttctagcctttctctaattcaaccacaggggtcctttatgtca 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cttctagcctttctctaattcaaccacaggggtcctttatgtca 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
