BAC Information

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BAC

Clone NameMSMg01-493N13
Chromosome10 (Build37)
Map Location 16,397,234 - 16,397,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493N13.T7 (MSMg01no493_n13.b1)MSMg01-493N13.TJ (MSMg01no493_n13.g1)
ACCAG571267AG571268
length737747
length of high quality
(start - end)		693 (45 - 737)375 (72 - 446)
definitionCHROMAT_FILE: MSMg01no493_n13.b1 PHD_FILE: MSMg01no493_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:32 2005CHROMAT_FILE: MSMg01no493_n13.g1 PHD_FILE: MSMg01no493_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCACTATTTCCAATTCTGTACTAAAATCCTGGTTTTTTTTTTTTG
TTTTGTTTTTGTTTTTTGTTTTTTGTCTTTTGTTTTTTGTTTTGTATTGA
TTTTGTTTTTGTTTCTGGTTGGGAGAATTTTAATGACTACTTATATTTCC
TTAGGAATTGTGGGACATTTAGGTGGTTTATCTGATCCTGATTTAACTTT
TATATCTGGTATCTGTCTAGAAAATAATACATTTCATCCATGTTTTCCAG
TTTTGTTGAGTATAGACTTTTGTAGTTGGATGTGGTTATTTTTTTGAATT
TCCTCAGTTTCTGTTATTTAGTCTCCCTTTTCCTGATTTTGGTAATTTAG
ATACTGTGTCTGTGCCCTCTGATTTGTGTGGGTAAGGGTTTATCTATCTT
GTGGATTTTCTCCAAGAACCAACTCCTGGTTTTGTTGATTCTTCATATAG
TGCTCTTTGTTTCCATTTGGTTGATTTCAGTTCTGAGTTTGAATATGTCC
TGCCATCTACTCCTCTTGGATGTATTTGCTTCTTTATGTTCTAGAGCTTG
CAGATGTGTTGTTAAGCTGTTAATGTATGCTCTATCCAATTTCTTTGTGC
ATGTCCTCTGAGCTATGAGTTTTCCTCTTAGCACTACTTTCATTGTTTCC
CATAAGGTTGTGCATGTTATGACTCCATTTTCATGAN

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACAGGTATCAGGCATACATGTGGCAAAG
ACATAAATGAAGGCATCATTCACACAATAAAAATAAAGATAGAAAGTAAA
AAAGACTGCAATAAAACTGATATGAAGACAGAGTGAAACATGCAAAGTTT
TCCCCTGGTCTTGACATGTACTTTTACATACACATATGCACCAATATTTA
CACATGTGAATATATATATATATATATATATATATATATGTATATATATA
TATATACATATATATATGTATGTATATACATATATGTGTGTGTGTGTATG
CATGCATATATTTACACATGTGGATATATATATTCATATGTATATACACA
TACACACATATATATGTGTGTGTGTGTATATACATTATGAATATATATAT
CCACAGTGTGTGAATATATGCATGCATACACACACACACATATATGTATA
TACATACATATATATATGTATATATATATATATACATATATATATATATA
TATATATATATATATTCACATGTGTAAATATTGGTGCATATGTGTATGTA
AAAGTACATGTATAGACCAGGGGAAAAATTTGCATGTTTCACCCTGTCTT
CATATCAGTTTAATTGAAGTCTTTTATACTTTCGATCTTTATTTTTATTG
CGTGAATGAAGCCTTCATTTATGTCTTTTGCACATGTAAGCCTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_n13.g1 MSMg01no493_n13.g1 CHROMAT_FILE:
MSMg01no493_n13.g1 PHD_FILE: MSMg01no493_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:32 2005
         (375 letters)



>mm_chr10_16397034_16397812
          Length = 779

 Score =  590 bits (305), Expect = e-173
 Identities = 340/359 (94%), Gaps = 16/359 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggtatcaggcatacatgtggcaaagacataaatgaaggcatcattcacacaataaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cacaggtatcaggcatacatgtggcaaagacataaatgaaggcaacattcacacaataaa 260

                                                                       
Query: 61  aataaagatagaaagtaaaaaagactgcaataaaactgatatgaagaca----gagtgaa 116
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 261 aataaagatagaaagtaaaaaagactgcaataaaactgatatgaagacagactgagtgaa 320

                                                                       
Query: 117 acatgcaaagttttcccctggtcttgacatgtacttttacatacacatatgcaccaatat 176
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acatgcaaagttttcccctggtcttgacatgtacttttacgtacacatatgcaccaatat 380

                                                                       
Query: 177 ttacacatgtgaatatatatatatatatatatatatatatatgtatatata----tatat 232
           |||||||||||||||||||||||||||||||||||| |||  |||||||||    |||||
Sbjct: 381 ttacacatgtgaatatatatatatatatatatatatgtat--gtatatatacatatatat 438

                                                                       
Query: 233 atacatatatatat----gtatgtatatacatatatgtgtgtgtgtgt--atgcatgcat 286
           ||||||||||||||    ||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 439 atacatatatatatatatgtatgtatatacatatatgtgtgtgtgtgtgtatgcatgcat 498

                                                                      
Query: 287 atatttacacatgtggatatatatattcatatgtatatacacatacacacatatatatg 345
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atatttacacatgtggatatatatattcatatgtatatacacatacacacatatatatg 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 779
Length adjustment: 9
Effective length of query: 366
Effective length of database: 770
Effective search space:   281820
Effective search space used:   281820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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