BAC Information

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BAC

Clone NameMSMg01-493P22
Chromosome10 (Build37)
Map Location 26,755,330 - 26,922,038
singlet/doubletdoublet
Overlap geneLama2
Upstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493P22.T7 (MSMg01no493_p22.b1)MSMg01-493P22.TJ (MSMg01no493_p22.g1)
ACCAG571379AG571380
length763780
length of high quality
(start - end)		714 (42 - 755)508 (74 - 581)
definitionCHROMAT_FILE: MSMg01no493_p22.b1 PHD_FILE: MSMg01no493_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:43 2005CHROMAT_FILE: MSMg01no493_p22.g1 PHD_FILE: MSMg01no493_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,755,330 - 26,756,040)(26,921,534 - 26,922,038)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACATGTCAATTTGAAAAGTCCTACAGGAAAAGTGATATAAGCTAGGTTT
CTATATGTATACTTAATCAGCTTGTGGGGGTAACTCTCCTTATAAAATAA
TTATAACCAGAAGTCATTAATAGATAACCAAACTCACATGGTGATGAAGA
GGAACTCACAGAGGAAGAGACTAGTCTTAATTGACTGTGCTTCAAATCTC
TCATCTGTGAAGATTTTATAAAAAACACATAGCCATGTAAATATATTGAA
GGGCACTTTTCAAGATCCTTGGAAAATACCTTCACAGTTGAGAAGGGAGC
TGAAGTTTCACCTACTTGATAAATCCACCAGAAGTACAATCAAACCTATT
CTACGTCATGATAGATAGAGATCCAGTAAAATTCAAACTGTGTGTTGCAC
AGACCTGGCCTTTTCGTCTCAACTCACCTGACAGTACATCCCTTACAGTC
GCCTTCTTTCTCCCGGAAATTCCATAAACCTATAGGTTTGTTGTCAAAGT
ATGTTTCTCCCATACAGCCGGTGAAGGTGATCACACGTACAGCATCGGCC
TTCTGCAGAGAGACGTGGGATGTGTGGGATTTCAGGATTTCATGAATTGC
AGTATTTATGAATTATTAGCAACAGAAGGCAGATAGTTCTTATCTGTTCC
ATAGGACAATCTTAGCATCTTCTTATGGCTATCTTATGTCCTCACAGCAA
CAAGAAGAAAGTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGAGTTAATGATGGCTTTAGAATAA
TGATGAGAGATGATGACTATAAGTATATTTCCTGACATTATCTTTATTAA
CAGTTTTAATTGTGGTACACATTATGCTTTGGCAGAGAAAGCTAATTCAT
TGCTCAGATCTCTATGATTACACCGAAGTTCTACATAGCAAATTTCTATT
TTCAAATAATGATTCAGATGTACCAACATGTTTCTTAGCACATAAATTTA
AACATAATGCTATTTTTTCTTTTTAATGAATGTCATATATAAATAAATCT
ATCAGCTTATCATTAGCAAAACAGTATCAATAACCACTAGCATTTATTTG
GCACTTATTCTATGTCAAGCACTGTACTAAGCATTCAGAGCTGGTATAAA
ACAATTTGAGTAATAATAAATATGACACTTTAGATTTTAAATTTATCAAA
TAATCAATTGACTCAGTTAAAATAGGTTAGCCATCAACTAACCAGTTAAA
AAACTATCCCACAACACTGATCTTCAGTTTGAATTTGAGTATTCTTGTTT
CTTGCCTTATAAATATTTTGTTAAGAACTGTGCCTAACTGTATTCTTATC
AGATTGAATCCAGTTGAACCAACATATTGGTGTGCATCCATTTCCCAAGG
TTAGGCTTTCTGTACACCCACCCCATATTTAATATCCTACCTTCTCTTGT
ATAATATACACAAAAAGATGCATATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_p22.b1 MSMg01no493_p22.b1 CHROMAT_FILE:
MSMg01no493_p22.b1 PHD_FILE: MSMg01no493_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:43 2005
         (714 letters)



>mm_chr10_26755127_26756240
          Length = 1114

 Score = 1274 bits (659), Expect = 0.0
 Identities = 698/711 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacatgtcaatttgaaaagtcctacaggaaaagtgatataagctaggtttctat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacatgtcaatttgaaaagtcctacaggaaaagtgatataagctaggtttctat 263

                                                                       
Query: 64  atgtatacttaatcagcttgtgggggtaactctccttataaaataattataaccagaagt 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 264 atgtatacttaatcagcttgtgggggtaactctccttataaaatgattataactagaagt 323

                                                                       
Query: 124 cattaatagataaccaaactcacatggtgatgaagaggaactcacagaggaagagactag 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 cattaatagataaccaaactcacatggcgatgaagaggaactcacagaggaagagactag 383

                                                                       
Query: 184 tcttaattgactgtgcttcaaatctctcatctgtgaagattttataaaaaacacatagcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttaattgactgtgcttcaaatctctcatctgtgaagattttataaaaaacacatagcc 443

                                                                       
Query: 244 atgtaaatatattgaagggcacttttcaagatccttggaaaataccttcacagttgagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtaaatatattgaagggcacttttcaagatccttggaaaataccttcacagttgagaa 503

                                                                       
Query: 304 gggagctgaagtttcacctacttgataaatccaccagaagtacaatcaaacctattctac 363
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 gggagctgaagtttcacctacttgataaatccaccagaagtacagtcaaacctattctac 563

                                                                       
Query: 364 gtcatgatagatagagatccagtaaaattcaaactgtgtgttgcacagacctggcctttt 423
           |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 564 gtcatgatagatggagatccagtaaaattcaaactgtgtgctgcacagacctggtctttt 623

                                                                       
Query: 424 cgtctcaactcacctgacagtacatcccttacagtcgccttctttctcccggaaattcca 483
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 catctcaactcacctgacagtacatcccttacagtcgccttctttctcccggaagttcca 683

                                                                       
Query: 484 taaacctataggtttgttgtcaaagtatgtttctcccatacagccggtgaaggtgatcac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaacctataggtttgttgtcaaagtatgtttctcccatacagccggtgaaggtgatcac 743

                                                                       
Query: 544 acgtacagcatcggccttctgcagagagacgtgggatgtgtgggatttcaggatttcatg 603
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 744 acgtacagcatcggccttctgcagagagacgtgggacgtgtgggatttcaggatttcagg 803

                                                                       
Query: 604 aattgcagtatttatgaattattagcaacagaaggcagatagttcttatctgttccatag 663
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 804 aattgcagtatttatgaattattagcaagagaaggcagagagttcttatctgttccatag 863

                                                              
Query: 664 gacaatcttagcatcttcttatggctatcttatgtcctcacagcaacaaga 714
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gacaatcttagcatcttcttatggctatcttatgtcctcacagcaacaaga 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no493_p22.g1 MSMg01no493_p22.g1 CHROMAT_FILE:
MSMg01no493_p22.g1 PHD_FILE: MSMg01no493_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:43 2005
         (508 letters)



>mm_chr10_26921534_26922441
          Length = 908

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagttaatgatggctttagaataatgatgagagatgatgactataagtatatttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgagttaatgatggctttagaataatgatgagagatgatgactataagtatatttcct 446

                                                                       
Query: 61  gacattatctttattaacagttttaattgtggtacacattatgctttggcagagaaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacattatctttattaacagttttaattgtggtacacattatgctttggcagagaaagct 386

                                                                       
Query: 121 aattcattgctcagatctctatgattacaccgaagttctacatagcaaatttctattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattcattgctcagatctctatgattacaccgaagttctacatagcaaatttctattttc 326

                                                                       
Query: 181 aaataatgattcagatgtaccaacatgtttcttagcacataaatttaaacataatgctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaataatgattcagatgtaccaacatgtttcttagcacataaatttaaacataatgctat 266

                                                                       
Query: 241 tttttctttttaatgaatgtcatatataaataaatctatcagcttatcattagcaaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttctttttaatgaatgtcatatataaataaatctatcagcttatcattagcaaaaca 206

                                                                       
Query: 301 gtatcaataaccactagcatttatttggcacttattctatgtcaagcactgtactaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtatcaataaccactagcatttatttggcacttattctatgtcaagcactgtactaagca 146

                                                                       
Query: 361 ttcagagctggtataaaacaatttgagtaataataaatatgacactttagattttaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttcagagctggtataaaacaatttgagtaataataaatatgacactttagattttaaatt 86

                                                                       
Query: 421 tatcaaataatcaattgactcagttaaaataggttagccatcaactaaccagttaaaaaa 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  aatcaaataatcaattgactcagttaaaataggttagccatcaactaaccagttaaaaaa 26

                                    
Query: 481 ctatcccacaacactgatcttcagt 505
           |||||||||||||||||||||||||
Sbjct: 25  ctatcccacaacactgatcttcagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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