BAC Information

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BAC

Clone NameMSMg01-495H01
Chromosome10 (Build37)
Map Location 37,792,520 - 37,879,562
singlet/doubletdoublet
Overlap genenone
Upstream geneMarcks, LOC100040846
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495H01.T7 (MSMg01no495_h01.b1)MSMg01-495H01.TJ (MSMg01no495_h01.g1)
ACCAG572484AG572485
length695749
length of high quality
(start - end)
590 (79 - 668)651 (86 - 736)
definitionCHROMAT_FILE: MSMg01no495_h01.b1 PHD_FILE: MSMg01no495_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:31 2005CHROMAT_FILE: MSMg01no495_h01.g1 PHD_FILE: MSMg01no495_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:31 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(37,879,086 - 37,879,562)(37,792,520 - 37,793,170)
sequence
NTGTCTTTTNTTNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTCATTTCTACTTTTAGCAGCATAAATCATG
GCCATTATTGTAGTGCTAGGGTATTCTCACACGGAAATGTCACACCTCTT
TGGTAAAAGATGATTATTGATATTCTGTATATATTAATAAATGCTGGAAA
TTAATATGGTGGCAGTTATTCCTTATCCAGTTAGTTTCCCCAAGAAAACA
CATGCAGAAACTTTTTAATATTTTAAAGCTTAGGTCTTAGCTAGGCAGAC
TCTGAACTAACTTATCTAGCTTAGCTTGACCATACAGACCAATCCAGGCA
GGTGGCTTGCTATACCTTGCCGGCCTGTAATCATGGATCGCCTTCTCTTT
CTCATGGTGAAAAAGCCTTTCTTTTTCTTCTTTCCATAGCTTTTTTCTCC
CTCCCAGGAAGACCTACCTATCTCTCTCTACTGCCTAATTACAGGCTTCA
GCATTTTATTGGCCAATTAACTTGGGGAACAAGGTTCAGACAACAAAAGC
TGGTGTATTTGAGAATTTGCTCTTACAGCAACCAGATCTAAGGGTACAGA
ATAAATTTGAAACCATAAGCAGTACCAGACCAAACCTAACATTCCCTCTA
TGCTTATTGAGCTGCATATAGAATAGCCAAGATATTAAAAACAAA
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAATGATTCCTCC
CACAGATTCCTCTTCTTCTGCTATTGCCAGCCTCTGGTATCCATCATTTT
GGTGTAGAATATATTTTTAGCTCACATATGGAGAAGATCCTTAATTTAAA
AGTCATACATGTTGGAACATAATATTCAATGTCTTAGAAGCTTTAATATT
TTAGCATTTGTTTCTATGAATGACTATTAATCAGCATTGAGTATTTTGAT
TTTTATCCCTGATGTCTGAGGACCTACATTTCTAGACATTTTTAAGGAAA
TTCTTATTTTTGTAAATAGAAACAGAATTAAGGCCATCTCTTACTAAATC
AAATTCTGGGGGAAGAGTTATAGAGTCTGTTAACAGAATTCATTTTTCGT
TTCCTTTCCAAGTATATGAAATAATGTTTCTTTTTAACAATATTATTTCC
AGCATACAGAATCATCCCAGGAAACCCACAGAGCTAGTTAAAGCTAACAT
GCTTTCTACTGCATATGTCTCATGAGCCACAAACAATTTAAATTTTAGCC
ACACTAAAAAGCCTAAATAGGTAATCATTGTTTTAATGTATTTTAACAAA
CTATATACAAGCATTATTATTTTAATGCATGATCCCATCGTAAAATAATC
CAAAAGATATTCTTGTACAATTTTACTGATAGCAAATTTTAAAATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_h01.b1 MSMg01no495_h01.b1 CHROMAT_FILE:
MSMg01no495_h01.b1 PHD_FILE: MSMg01no495_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:31 2005
         (590 letters)



>mm_chr10_37879086_37880075
          Length = 990

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttagcagcataaatcatggccattattgtagtgctagggtattctcacacggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acttttagcagcataaatcatggccattattgtagtgctagggtattctcacacggaaat 418

                                                                       
Query: 61  gtcacacctctttggtaaaagatgattattgatattctgtatatattaataaatgctgga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtcacacctcttcggtaaaagatgattattgatattctgtatatattaataaatgctgga 358

                                                                       
Query: 121 aattaatatggtggcagttattccttatccagttagtttccccaagaaaacacatgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aattaatatggtggcagttattccttatccagttagtttccccaagaaaacacatgcaga 298

                                                                       
Query: 181 aactttttaatattttaaagcttaggtcttagctaggcagactctgaactaacttatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aactttttaatattttaaagcttaggtcttagctaggcagactctgaactaacttatcta 238

                                                                       
Query: 241 gcttagcttgaccatacagaccaatccaggcaggtggcttgctataccttgccggcctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gcttagcttgaccatacagaccaatccaggcaggtggcttgctataccttgccggcctgt 178

                                                                       
Query: 301 aatcatggatcgccttctctttctcatggtgaaaaagcctttctttttcttctttccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aatcatggatcgccttctctttctcatggtgaaaaagcctttctttttcttctttccata 118

                                                                       
Query: 361 gcttttttctccctcccaggaagacctacctatctctctctactgcctaattacaggctt 420
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 117 gtttttttctccctcccaggaagtcctacctatctctctctactgcctaattacaggctt 58

                                                                    
Query: 421 cagcattttattggccaattaacttggggaacaaggttcagacaacaaaagctggtg 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  cagcattttattggccaattaacttggggaacaaggttcagacaacaaaagctggtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no495_h01.g1 MSMg01no495_h01.g1 CHROMAT_FILE:
MSMg01no495_h01.g1 PHD_FILE: MSMg01no495_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:31 2005
         (651 letters)



>mm_chr10_37792320_37793370
          Length = 1051

 Score = 1166 bits (603), Expect = 0.0
 Identities = 639/651 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatgattcctcccacagattcctcttcttctgctattgccagcctctggtatccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatgattcctcccacagattcctcttcttctgctattgccagcctctggtatccatc 260

                                                                       
Query: 61  attttggtgtagaatatatttttagctcacatatggagaagatccttaatttaaaagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttggtgtagaatatatttttagctcacatatggagaagatccttaatttaaaagtca 320

                                                                       
Query: 121 tacatgttggaacataatattcaatgtcttagaagctttaatattttagcatttgtttct 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatgttggaacataatattcaaagtcttagaagctttaatattttagcatttgtttct 380

                                                                       
Query: 181 atgaatgactattaatcagcattgagtattttgatttttatccctgatgtctgaggacct 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaatgactattaatcagcattgaatattttgatttttatccctgatgtctgaggacct 440

                                                                       
Query: 241 acatttctagacatttttaaggaaattcttatttttgtaaatagaaacagaattaaggcc 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 acatttctagacatttttaaggaaattcttatttttgtatatagaaacagaattaaggcc 500

                                                                       
Query: 301 atctcttactaaatcaaattctgggggaagagttatagagtctgttaacagaattcattt 360
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 atctcttactagatcaaattctgggggaagagttatagagtctgttaacagaattcatct 560

                                                                       
Query: 361 ttcgtttcctttccaagtatatgaaataatgtttctttttaacaatattatttccagcat 420
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ttcatttcctttccaagtatatgaaataatgtttctttttaacaatattattcccagcat 620

                                                                       
Query: 421 acagaatcatcccaggaaacccacagagctagttaaagctaacatgctttctactgcata 480
           |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 acagcatcatcctaggaaacccacagagctagttaaagctaacgtgctttctactgcata 680

                                                                       
Query: 481 tgtctcatgagccacaaacaatttaaattttagccacactaaaaagcctaaataggtaat 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtctcatgagccacaaacaatttaaattttagccacactaaaaagcctaaataggtaat 740

                                                                       
Query: 541 cattgttttaatgtattttaacaaactatatacaagcattattattttaatgcatgatcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattgttttaatgtattttaacaaactatatacaagcattattattttaatgcatgatcc 800

                                                              
Query: 601 catcgtaaaataatccaaaagatattcttgtacaattttactgatagcaaa 651
           |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catcataaaataatccaaaagatattcttgtacaattttactgatagcaaa 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)